Gene detail information of Glyur000012s00000532.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20885.13.00E-30RING/U-box superfamily protein
NRKHN17774.13.61E-74RING-H2 finger protein ATL80 [Glycine soja]
Swissprottr|Q8H7N9|ATL31_ORYSJ2.00E-11E3 ubiquitin-protein ligase Os03g0188200
trEMBLtr|I1MS23|I1MS23_SOYBN1.00E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G04880.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00012113968114525-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000012s00000532.1PF13639.1zf-RING_2881381.30E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.036
SRR1783600control53.886
SRR1783602moderate drought stress92.077
SRR1811619moderate drought stress91.940

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain101.324
DRR006520Root Summer glycyrrhizin high producing strain100.690
DRR006521Root Winter glycyrrhizin high producing strain10.470
DRR006522Root Winter glycyrrhizin high producing strain11.666
DRR006523Root Summer glycyrrhizin low producing strain246.767
DRR006524Root Summer glycyrrhizin low producing strain247.758
DRR006525Leaf Summer glycyrrhizin high producing strain18.484
DRR006526Leaf Summer glycyrrhizin high producing strain18.072

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.955
SRR2868004Drought Stress(Tissue:root)55.684
SRR2967015Control (Tissue:root)69.388

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.123
SRR9715740Leave16.780
SRR9715741Leave36.297
SRR9715739Root173.036
SRR9715742Root95.377
SRR9715743Root107.447

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.834
SRR8749028MeJA induced 9h15.188
SRR8749029MeJA induced 9h14.455
SRR8749030Uninduced17.830
SRR8749031Uninduced14.163
SRR8749032Uninduced19.216

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.517
SRR8400027Control-Root89.407

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved