Gene detail information of Glyur000012s00000558.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48310.10chromatin remodeling factor18
NRXP_006593993.10PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1-like isoform X1 [Glycine max]
COGYP_006773581.11.00E-37SNF2-like protein [Candidatus Nitrosopumilus koreensis AR1]
Swissprottr|Q9S775|PKL_ARATH6.00E-26CHD3-type chromatin-remodeling factor PICKLE
trEMBLtr|K7LZ63|K7LZ63_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G17850.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00012253883262955+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000012s00000558.1PF00176.18SNF2_N1784601.10E-20
Glyur000012s00000558.1PF00271.26Helicase_C4955719.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.903
SRR1783600control9.889
SRR1783602moderate drought stress12.600
SRR1811619moderate drought stress12.396

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.159
DRR006520Root Summer glycyrrhizin high producing strain8.986
DRR006521Root Winter glycyrrhizin high producing strain17.655
DRR006522Root Winter glycyrrhizin high producing strain17.102
DRR006523Root Summer glycyrrhizin low producing strain5.794
DRR006524Root Summer glycyrrhizin low producing strain6.129
DRR006525Leaf Summer glycyrrhizin high producing strain6.538
DRR006526Leaf Summer glycyrrhizin high producing strain6.718

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.108
SRR2868004Drought Stress(Tissue:root)13.728
SRR2967015Control (Tissue:root)13.865

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.818
SRR9715740Leave8.367
SRR9715741Leave9.835
SRR9715739Root3.840
SRR9715742Root7.758
SRR9715743Root7.237

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.215
SRR8749028MeJA induced 9h11.173
SRR8749029MeJA induced 9h9.574
SRR8749030Uninduced8.351
SRR8749031Uninduced5.690
SRR8749032Uninduced3.744

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.790
SRR8400027Control-Root18.200

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved