Gene detail information of Glyur000012s00000561.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G02520.10P-glycoprotein 11
NRXP_003609885.10ABC transporter B family member [Medicago truncatula]
COGYP_629357.13.00E-116ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprottr|Q9FWX7|AB11B_ARATH0ABC transporter B family member 11
trEMBLtr|G7JR15|G7JR15_MEDTR0ABC transporter B family protein {ECO:0000313|EMBL:AES92082.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00012279537306676-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000012s00000561.1PF00664.18ABC_membrane553311.50E-54
Glyur000012s00000561.1PF00005.22ABC_tran3975451.60E-34
Glyur000012s00000561.1PF00664.18ABC_membrane7179894.50E-54
Glyur000012s00000561.1PF00005.22ABC_tran105812063.90E-33
Glyur000012s00000561.1PF00664.18ABC_membrane135116271.70E-53
Glyur000012s00000561.1PF00005.22ABC_tran169318413.30E-33
Glyur000012s00000561.1PF00664.18ABC_membrane201222831.10E-53
Glyur000012s00000561.1PF00005.22ABC_tran235325024.60E-36
Glyur000012s00000561.1PF00664.18ABC_membrane263528242.00E-25
Glyur000012s00000561.1PF00005.22ABC_tran290830552.10E-32
Glyur000012s00000561.1PF00664.18ABC_membrane322933622.50E-15
Glyur000012s00000561.1PF00664.18ABC_membrane336334594.60E-16
Glyur000012s00000561.1PF00005.22ABC_tran352836785.00E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.050
SRR1783600control6.099
SRR1783602moderate drought stress7.094
SRR1811619moderate drought stress7.171

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.397
DRR006520Root Summer glycyrrhizin high producing strain3.236
DRR006521Root Winter glycyrrhizin high producing strain1.972
DRR006522Root Winter glycyrrhizin high producing strain2.148
DRR006523Root Summer glycyrrhizin low producing strain3.136
DRR006524Root Summer glycyrrhizin low producing strain3.006
DRR006525Leaf Summer glycyrrhizin high producing strain2.487
DRR006526Leaf Summer glycyrrhizin high producing strain2.544

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.071
SRR2868004Drought Stress(Tissue:root)47.232
SRR2967015Control (Tissue:root)11.824

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.912
SRR9715740Leave2.006
SRR9715741Leave1.958
SRR9715739Root3.183
SRR9715742Root17.650
SRR9715743Root15.262

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.469
SRR8749028MeJA induced 9h14.785
SRR8749029MeJA induced 9h12.035
SRR8749030Uninduced3.910
SRR8749031Uninduced5.296
SRR8749032Uninduced4.530

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.896
SRR8400027Control-Root14.565

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved