Gene detail information of Glyur000012s00000590.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47070.1 | 0 | squamosa promoter binding protein-like 1 |
| NR | XP_003528599.1 | 0 | PREDICTED: squamosa promoter-binding-like protein 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SMX9|SPL1_ARATH | 0 | Squamosa promoter-binding-like protein 1 |
| trEMBL | tr|K7L3G6|K7L3G6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G36180.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 417141 | 423867 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000590.1 | PF03110.9 | SBP | 153 | 230 | 1.50E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.722 |
| SRR1783600 | control | 19.901 |
| SRR1783602 | moderate drought stress | 28.359 |
| SRR1811619 | moderate drought stress | 28.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.049 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.602 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.248 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.778 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.910 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.873 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.757 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.027 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.886 |
| SRR2967015 | Control (Tissue:root) | 46.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.670 |
| SRR9715740 | Leave | 20.626 |
| SRR9715741 | Leave | 20.916 |
| SRR9715739 | Root | 10.672 |
| SRR9715742 | Root | 24.562 |
| SRR9715743 | Root | 24.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.694 |
| SRR8749028 | MeJA induced 9h | 29.622 |
| SRR8749029 | MeJA induced 9h | 9.274 |
| SRR8749030 | Uninduced | 12.845 |
| SRR8749031 | Uninduced | 8.307 |
| SRR8749032 | Uninduced | 8.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 40.824 |
| SRR8400027 | Control-Root | 40.216 |