Gene detail information of Glyur000012s00000594.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G02500.20S-adenosylmethionine synthetase 1
NRAIT39705.10S-adenosylmethionine synthetase [Robinia pseudoacacia]
COGYP_001179664.16.00E-161S-adenosylmethionine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|Q8W3Y4|METK_PHALU0S-adenosylmethionine synthase
trEMBLtr|A0A097GX09|A0A097GX09_ROBPS0S-adenosylmethionine synthetase {ECO:0000313|EMBL:AIT39705.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00012450534451712-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00789metK EC:2.5.1.6 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006556  S-adenosylmethionine biosynthetic process


molecular_function

GO:0004478  methionine adenosyltransferase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000012s00000594.1PF00438.15S-AdoMet_synt_N41025.60E-42
Glyur000012s00000594.1PF02772.11S-AdoMet_synt_M1172391.90E-49
Glyur000012s00000594.1PF02773.11S-AdoMet_synt_C2413824.90E-67


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control444.617
SRR1783600control473.416
SRR1783602moderate drought stress544.566
SRR1811619moderate drought stress540.845

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain316.078
DRR006520Root Summer glycyrrhizin high producing strain316.623
DRR006521Root Winter glycyrrhizin high producing strain177.414
DRR006522Root Winter glycyrrhizin high producing strain171.793
DRR006523Root Summer glycyrrhizin low producing strain257.871
DRR006524Root Summer glycyrrhizin low producing strain258.790
DRR006525Leaf Summer glycyrrhizin high producing strain246.572
DRR006526Leaf Summer glycyrrhizin high producing strain244.886

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)817.537
SRR2868004Drought Stress(Tissue:root)1025.701
SRR2967015Control (Tissue:root)796.519

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave753.673
SRR9715740Leave640.244
SRR9715741Leave766.675
SRR9715739Root1117.537
SRR9715742Root840.432
SRR9715743Root861.887

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h233.548
SRR8749028MeJA induced 9h358.207
SRR8749029MeJA induced 9h105.716
SRR8749030Uninduced1214.174
SRR8749031Uninduced142.970
SRR8749032Uninduced235.302

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root797.862
SRR8400027Control-Root715.118

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved