Gene detail information of Glyur000012s00000599.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64220.2 | 4.00E-132 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
| NR | XP_003550574.1 | 0 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FY74|CMTA1_ARATH | 0 | Calmodulin-binding transcription activator 1 |
| trEMBL | tr|K7MJU5|K7MJU5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G04310.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 475771 | 484457 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CAMTA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000599.1 | PF03859.11 | CG-1 | 22 | 136 | 1.50E-52 |
| Glyur000012s00000599.1 | PF12796.2 | Ank_2 | 647 | 711 | 1.10E-07 |
| Glyur000012s00000599.1 | PF00612.22 | IQ | 859 | 876 | 0.0026 |
| Glyur000012s00000599.1 | PF00612.22 | IQ | 883 | 900 | 0.052 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.606 |
| SRR1783600 | control | 4.554 |
| SRR1783602 | moderate drought stress | 4.437 |
| SRR1811619 | moderate drought stress | 4.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.383 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.468 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.709 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.169 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.535 |
| SRR2967015 | Control (Tissue:root) | 26.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.381 |
| SRR9715740 | Leave | 6.227 |
| SRR9715741 | Leave | 10.526 |
| SRR9715739 | Root | 1.394 |
| SRR9715742 | Root | 6.912 |
| SRR9715743 | Root | 6.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.513 |
| SRR8749028 | MeJA induced 9h | 13.276 |
| SRR8749029 | MeJA induced 9h | 7.896 |
| SRR8749030 | Uninduced | 9.008 |
| SRR8749031 | Uninduced | 7.207 |
| SRR8749032 | Uninduced | 4.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.896 |
| SRR8400027 | Control-Root | 18.212 |