Gene detail information of Glyur000013s00003180.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56970.1 | 8.00E-17 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004493429.1 | 4.42E-57 | PREDICTED: transcription factor ORG3-like [Cicer arietinum] |
| Swissprot | tr|Q9M1K1|ORG2_ARATH | 7.00E-25 | Transcription factor ORG2 |
| trEMBL | tr|I3SH10|I3SH10_LOTJA | 2.00E-56 | Uncharacterized protein {ECO:0000313|EMBL:AFK39552.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 16044 | 17524 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003180.1 | PF00010.21 | HLH | 100 | 152 | 3.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.097 |
| SRR1783600 | control | 0.086 |
| SRR1783602 | moderate drought stress | 0.345 |
| SRR1811619 | moderate drought stress | 0.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.755 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.726 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.777 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.980 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.083 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.683 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.399 |
| SRR2967015 | Control (Tissue:root) | 19.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.514 |
| SRR9715740 | Leave | 0.706 |
| SRR9715741 | Leave | 5.687 |
| SRR9715739 | Root | 0.071 |
| SRR9715742 | Root | 0.087 |
| SRR9715743 | Root | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.289 |
| SRR8749028 | MeJA induced 9h | 18.041 |
| SRR8749029 | MeJA induced 9h | 2.067 |
| SRR8749030 | Uninduced | 4.976 |
| SRR8749031 | Uninduced | 16.484 |
| SRR8749032 | Uninduced | 1.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.685 |
| SRR8400027 | Control-Root | 2.309 |