Gene detail information of Glyur000013s00003200.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10230.10lycopene cyclase
NRXP_003554132.10PREDICTED: lycopene beta cyclase, chloroplastic-like isoform 2 [Glycine max]
COGYP_003706080.17.00E-83lycopene cyclase family protein [Truepera radiovictrix DSM 17093]
Swissprottr|Q43503|LCYB_SOLLC0Lycopene beta cyclase, chloroplastic (Precursor)
trEMBLtr|I1N8T4|I1N8T4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G31220.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00013119492121018-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06443lcyB, crtL1, crtY EC:5.5.1.19 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0016117  carotenoid biosynthetic process


molecular_function

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000013s00003200.1PF05834.7Lycopene_cycl934855.90E-129


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.061
SRR1783600control13.136
SRR1783602moderate drought stress10.973
SRR1811619moderate drought stress11.248

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.052
DRR006520Root Summer glycyrrhizin high producing strain11.125
DRR006521Root Winter glycyrrhizin high producing strain7.196
DRR006522Root Winter glycyrrhizin high producing strain6.889
DRR006523Root Summer glycyrrhizin low producing strain12.377
DRR006524Root Summer glycyrrhizin low producing strain12.066
DRR006525Leaf Summer glycyrrhizin high producing strain34.711
DRR006526Leaf Summer glycyrrhizin high producing strain34.880

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.264
SRR2868004Drought Stress(Tissue:root)24.436
SRR2967015Control (Tissue:root)20.221

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave60.190
SRR9715740Leave87.480
SRR9715741Leave52.886
SRR9715739Root13.879
SRR9715742Root17.009
SRR9715743Root17.105

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.488
SRR8749028MeJA induced 9h3.677
SRR8749029MeJA induced 9h3.351
SRR8749030Uninduced3.029
SRR8749031Uninduced1.281
SRR8749032Uninduced1.798

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.761
SRR8400027Control-Root20.845

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved