Gene detail information of Glyur000013s00003205.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41370.12.00E-177Ankyrin repeat family protein / BTB/POZ domain-containing protein
NRKHG11076.10Regulatory NPR5 -like protein [Gossypium arboreum]
Swissprottr|Q9ZVC2|NPR5_ARATH0Regulatory protein NPR5
trEMBLtr|G8GTN4|G8GTN4_MEDTR0BTB/POZ ankyrin repeat protein {ECO:0000313|EMBL:AET34788.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00013146776150783-


Gene family

Gene familysubfamily
Transcription Factors FamilyTRAF
Ubiquitin FamilyBTB
EAR motif-containing ProteinsTRAF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000013s00003205.1PF00651.26BTB171105.60E-14
Glyur000013s00003205.1PF11900.3DUF34201992624.70E-13
Glyur000013s00003205.1PF12796.2Ank_22643502.60E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.020
SRR1783600control20.893
SRR1783602moderate drought stress24.409
SRR1811619moderate drought stress24.292

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.691
DRR006520Root Summer glycyrrhizin high producing strain21.648
DRR006521Root Winter glycyrrhizin high producing strain7.384
DRR006522Root Winter glycyrrhizin high producing strain7.166
DRR006523Root Summer glycyrrhizin low producing strain23.407
DRR006524Root Summer glycyrrhizin low producing strain23.679
DRR006525Leaf Summer glycyrrhizin high producing strain0.567
DRR006526Leaf Summer glycyrrhizin high producing strain0.533

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.487
SRR2868004Drought Stress(Tissue:root)7.370
SRR2967015Control (Tissue:root)6.465

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.436
SRR9715740Leave0.256
SRR9715741Leave0.550
SRR9715739Root9.435
SRR9715742Root8.720
SRR9715743Root8.426

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.284
SRR8749028MeJA induced 9h10.593
SRR8749029MeJA induced 9h7.075
SRR8749030Uninduced7.520
SRR8749031Uninduced5.052
SRR8749032Uninduced2.556

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.991
SRR8400027Control-Root15.481

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved