Gene detail information of Glyur000013s00003213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26850.1 | 1.00E-56 | F-box family protein |
| NR | XP_003520488.1 | 3.24E-126 | PREDICTED: F-box protein At2g26850-like isoform X1 [Glycine max] |
| Swissprot | tr|Q6NLB1|FB118_ARATH | 6.00E-64 | F-box protein At2g26850 |
| trEMBL | tr|K7KEN5|K7KEN5_SOYBN | 1.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G28222.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 211798 | 218908 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003213.1 | PF00646.28 | F-box | 65 | 108 | 3.00E-07 |
| Glyur000013s00003213.1 | PF00646.28 | F-box | 377 | 420 | 3.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.591 |
| SRR1783600 | control | 1.598 |
| SRR1783602 | moderate drought stress | 1.714 |
| SRR1811619 | moderate drought stress | 1.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.908 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.853 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.432 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.418 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.748 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.909 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.185 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.933 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.701 |
| SRR2967015 | Control (Tissue:root) | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.509 |
| SRR9715740 | Leave | 0.303 |
| SRR9715741 | Leave | 0.473 |
| SRR9715739 | Root | 0.126 |
| SRR9715742 | Root | 0.142 |
| SRR9715743 | Root | 0.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.120 |
| SRR8749028 | MeJA induced 9h | 1.405 |
| SRR8749029 | MeJA induced 9h | 1.163 |
| SRR8749030 | Uninduced | 1.188 |
| SRR8749031 | Uninduced | 0.374 |
| SRR8749032 | Uninduced | 0.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.395 |
| SRR8400027 | Control-Root | 2.254 |