Gene detail

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Gene detail information of Glyur000013s00003222.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68560.1	1.00E-15	alpha-xylosidase 1
NR	XP_003521128.1	0	PREDICTED: alpha-xylosidase 1-like isoform X1 [Glycine max]
COG	YP_645315.1	0	alpha-glucosidase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q9S7Y7\|XYL1_ARATH	2.00E-20	Alpha-xylosidase 1 (Precursor)
trEMBL	tr\|K7KEN9\|K7KEN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G28281.1}

Sequence

Transcript Sequence

>Glyur000013s00003222.1
CATACCATATTTTTGTAATACAATTCAAAGCACCGAAGCTAAATGCATAAATGGAAATGGAAACGAGAAGGAAACTGGTCTTGAACACTCCATTGTGACACCAATCAAATTTGGTTGCTCGATCCATTCTGTCCTTTAGTTGAAAAAAAGTCAGACTCAGGACTCTGCCCAACACCGTCTTCAACAAAACACACGCCANAGGACTTTTCCATCCTCTCTCAAATGCTGCATGCAAAGAATCTCTATATAGAAAAACTTCATAGGAATCTCAAGAACTCAAACTAATTTGAGCATCAAAACATTCTCCTATATTTGTTTATTCATTTATTTATTTCCCGTAATGGCAATCCTTAAGATAACCAAAAAGCACCACAAGCGATTCAACAACCCTTTCCCTTCTTCTGCTGCTCCAACCACCATTCCCTATATCCAAGGCTCACTGTTCATCAATCCCAAAGAGTTGCCTTTAGATCAGAACTTCTCAATTGGCAATGATTTTCAACTTTCTTGGTCCACCAACGATGGTGGGCACCTCTCAATTTCACATCTTTCTCAGCCAAATAGATCCATTTGGTCCACCATCCCAGGACAAGCCTTTGTCTCAGCTGCAATGGTTGACACAGAAGTGGAAGAGAGTAGGGGATCCTTTCTTGTTAAAGATAGAGATGTTCATTTGATCTGCAACCACCAAACCATTGAGGACATTAGGGTGATCAATCAATTTGGTGATCATCATTTGGAATATGAAGTTGCAGATTCTCCACATGGAAAAACTCGTGAAGATACAGAAGAGACCAAGCTTCCCACTTTGCTGATCACAGGAAGGCTTTTCAATGTGACTAAGAAGAAGAAAAGGTTTCAAAAGCATGGCATTGAAGCAAATGTACAGTTTGAAGCAAACGGGCCATTTGTGTATGCAAGGTATTGGGTTTTGTTCAATCAGAAAAACAACCATGAGGTTGGTTTTCAAGTGAAGATTGAGAAACCAAACTTCACCTCACACAACCAGAAGGTCTCTCCTCCGGCAGCTTCAGGGATATACCGGGGTTTTAAGAGGCGGCTGAGCAATCGCAAAAAGAGGATGGGTTGTTGTTGGTACCTTTCAAGGCCAAGAGGGTTTGTTCTGGTTTCTTCAGTGGAGGATGAAATAGTAGGAGACATGGAAATACCAAAGTCAAAGGAATTCAACAGGGTGTGGTTGACATATGCAAGTGATGAGAATGAGAGGTTTTATGGTTTTGGGGAGCAGTTTTCTCACATGAATTTCAAGGGCAAAAGGGTCCCCATCTTAGTTCAAGAACAAGGTATTGGAAGAGGAGATCAACCTATTACTTTAGCTGCTAACTTGGTCAGTTACAGGGCAGGAGGTGATTGGAGTACAACATATGCTCCTTCTCCATTCTACATGACATCAAAAATGAGGTCTCTCTACCTTGAAGGATATGATTATACCATCTTCGATCTTACTAGACTTGACAGAGTACAGATACAGATACATGGAAACTNGGTTGAAGGACGGATATTGCATGGGAACTCACCTTGTGAACTGATTGAACGTTTCACAGAAACCATTGGAAGGCTACCTGAGCTTCCAGAGTGGATAATATCTGGTGCTATAGTTGGAATGCAGGGTGGCACAGATGCTGTACGCCATATTTGGGATGAACTAAGAACTCATGATGTTCCTGTCTCAGCATTTTGGTTGCAGGATTGGGTAGGACAGAGGGAAACAATGATTGGTTCACAACTCTGGTGGAATTGGGAAGTGGATGCACAGAGATATTGGGGTTGGAAGGAACTTATCAAAGATCTTAGCACTCAGAATATAAAAGTTATGACTTATTGCAATCCCTGTCTAGCTCCGGTTGATGAGAAGCAAAACAAGAGGAGAAACCTCTATGAGGAGGCAAAACAGTTGGACATATTGGTGAAAGACAGTAATGGGAATCCATATATGGTACCAAACACGGCTTTTAATGTGGGAATGCTAGATCTAACGCACCCAAAAACCGCAACTTGGTTCAAGCAGATTCTACAAGAAATGGTGGATGATGGAGTTAGAGGATGGATGGCTGATTTTGGTGAAGGCCTACCCGTTGATGCTGTTCTATATTCAGGTGAAGATCCTATTTCAGCTCATAACAGATACCCAGAACTATGGGCCAAGATCAACAGAGAGCTTGTGGAAGAATGGAAAAACAACTCCTTGGACAAGTTGAAGGAAGACCAAGAAGAAGAGGGCTTGGTTTTCTTCATGAGGGCTGGTTTTAGAGATAGCCCCAAGTGGGGGATGCTATTTTGGGAAGGTGACCAAATGGTGAGTTGGCAAGCAAATGATGGAATAAAGAGTTCTGTTGTTGGCCTACTGAGCAGTGGAATTTCTGGCTATGCCTTTAATCACAGTGATATTGGAGGATATTGTACAGTAAACTTACCTATAGTTAAGTACAGAAGAAGTCAAGAATTGCTTCTGCGATGGATGGAGCTAAACTCTTTCACCACAGTCTTCCGTACCCATGAAGGAAACAAACCATCATGCAACAGCCAGTTTTACTCAAACCAACAAACTCTGTCACACTTTGCGCGCTCTGCAAAAATATACACAGCATGGAAATTTTACCGAATTCAACTGGTGAAGGAAGCAGCAAAGAAAGGATTGCCTGTATGCCGCCACCTATTTCTCCATTACCCTAACGATGAATGCGTGCATCACTTGACTTATCAGCAGTTCCTGGTTGGTTGTGAGTTCCTAGTGGTGCCTGTCCTTGACAAAGGAAAGAAGAAAGCTAAAGCCTATTTTCCATTGGGAGAGAGTAGCAGTTGGCTACACATCTGGACAGGAAAAGTGTTTTCCAAACAAGGAAGTGAAGCATGGGTAGAAGCTCCAATAGGATACCCTGCTGTATTTATTAAGGTTGGCTCCCTTATTGGAGAAACCTTTTTGAATAACCTAAGAAGTTTAGGCATTCTTTAATAAACCATTCATTAAAGAAGGATGAATCTCAGATATGTAACATAGCATCTAAGTAACTTCTCAATTCATGCCCCTGAATAGCTTGTGTCATTGTAATTGAAGCTAGTGTAAATACAACAAGCTTGGTTTCTTTGTTGGATGGACTTTTATGCCATCAAACGAACATGTTTCAATACAACAAGCATTGAAATGAAGAGTACCTGGATATATGATATGATCCCCCAGGAACTTGAAAGAGTTGAGAGAATTAAATATCATAGAGCATGTTCCTAAACAAAATTGAACTTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	277459	282091	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0003824 catalytic activity GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003222.1	PF01055.21	Glyco_hydro_31	395	863	3.10E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.774
SRR1783600	control	0.780
SRR1783602	moderate drought stress	0.771
SRR1811619	moderate drought stress	0.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.907
DRR006520	Root Summer glycyrrhizin high producing strain	0.930
DRR006521	Root Winter glycyrrhizin high producing strain	0.512
DRR006522	Root Winter glycyrrhizin high producing strain	0.499
DRR006523	Root Summer glycyrrhizin low producing strain	3.359
DRR006524	Root Summer glycyrrhizin low producing strain	3.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.346

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.418
SRR2868004	Drought Stress(Tissue:root)	4.900
SRR2967015	Control (Tissue:root)	4.642

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.057
SRR9715740	Leave	0.392
SRR9715741	Leave	3.226
SRR9715739	Root	0.172
SRR9715742	Root	0.502
SRR9715743	Root	0.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.277
SRR8749028	MeJA induced 9h	0.692
SRR8749029	MeJA induced 9h	0.574
SRR8749030	Uninduced	3.302
SRR8749031	Uninduced	2.146
SRR8749032	Uninduced	0.837

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	10.693
SRR8400027	Control-Root	14.801