Gene detail information of Glyur000013s00003225.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26850.1 | 3.00E-108 | F-box family protein |
| NR | XP_003554122.1 | 0 | PREDICTED: F-box protein At2g32560-like [Glycine max] |
| Swissprot | tr|Q6NLB1|FB118_ARATH | 2.00E-129 | F-box protein At2g26850 |
| trEMBL | tr|I1N8R4|I1N8R4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G30990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 294961 | 307473 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003225.1 | PF00646.28 | F-box | 7 | 53 | 2.00E-05 |
| Glyur000013s00003225.1 | PF00646.28 | F-box | 318 | 362 | 5.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.373 |
| SRR1783600 | control | 2.293 |
| SRR1783602 | moderate drought stress | 1.217 |
| SRR1811619 | moderate drought stress | 1.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.413 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.370 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.297 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.289 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.733 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.732 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.806 |
| SRR2967015 | Control (Tissue:root) | 6.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.403 |
| SRR9715740 | Leave | 2.898 |
| SRR9715741 | Leave | 3.110 |
| SRR9715739 | Root | 0.998 |
| SRR9715742 | Root | 1.318 |
| SRR9715743 | Root | 1.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.038 |
| SRR8749028 | MeJA induced 9h | 0.030 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.217 |
| SRR8749031 | Uninduced | 0.329 |
| SRR8749032 | Uninduced | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.229 |
| SRR8400027 | Control-Root | 8.521 |