Gene detail information of Glyur000013s00003234.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41130.1 | 3.00E-57 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003624955.1 | 5.00E-133 | Transcription factor bHLH106 [Medicago truncatula] |
| Swissprot | tr|O80674|BH106_ARATH | 3.00E-75 | Transcription factor bHLH106 |
| trEMBL | tr|V7CXP7|V7CXP7_PHAVU | 4.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:ESW34065.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 383222 | 385045 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003234.1 | PF00010.21 | HLH | 76 | 122 | 4.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.105 |
| SRR1783600 | control | 2.102 |
| SRR1783602 | moderate drought stress | 2.786 |
| SRR1811619 | moderate drought stress | 2.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.923 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.731 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.650 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.721 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.886 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.981 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.680 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.822 |
| SRR2967015 | Control (Tissue:root) | 25.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.637 |
| SRR9715740 | Leave | 2.431 |
| SRR9715741 | Leave | 4.399 |
| SRR9715739 | Root | 16.512 |
| SRR9715742 | Root | 13.385 |
| SRR9715743 | Root | 11.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.293 |
| SRR8749028 | MeJA induced 9h | 1.687 |
| SRR8749029 | MeJA induced 9h | 1.510 |
| SRR8749030 | Uninduced | 0.273 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.984 |
| SRR8400027 | Control-Root | 11.111 |