Gene detail information of Glyur000013s00003237.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26800.11.00E-125Aldolase superfamily protein
NRXP_004493382.10PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cicer arietinum]
COGYP_005027230.13.00E-127isopropylmalate/homocitrate/citramalate synthase [Dechlorosoma suillum PS]
Swissprottr|O81027|HMGCL_ARATH8.00E-167Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|I1N8Q3|I1N8Q3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G30880.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00013414420420551+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01640E4.1.3.4, HMGCL, hmgL EC:4.1.3.4 Butanoate metabolism map00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Geraniol degradationmap00281
Peroxisomemap04146


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000013s00003237.1PF00682.14HMGL-like1383858.20E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.712
SRR1783600control5.808
SRR1783602moderate drought stress6.382
SRR1811619moderate drought stress6.139

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.643
DRR006520Root Summer glycyrrhizin high producing strain10.797
DRR006521Root Winter glycyrrhizin high producing strain8.929
DRR006522Root Winter glycyrrhizin high producing strain8.855
DRR006523Root Summer glycyrrhizin low producing strain9.318
DRR006524Root Summer glycyrrhizin low producing strain9.265
DRR006525Leaf Summer glycyrrhizin high producing strain3.734
DRR006526Leaf Summer glycyrrhizin high producing strain3.375

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.316
SRR2868004Drought Stress(Tissue:root)13.545
SRR2967015Control (Tissue:root)12.695

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.806
SRR9715740Leave8.456
SRR9715741Leave8.674
SRR9715739Root1.494
SRR9715742Root6.960
SRR9715743Root5.338

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.705
SRR8749028MeJA induced 9h7.517
SRR8749029MeJA induced 9h3.890
SRR8749030Uninduced6.338
SRR8749031Uninduced5.219
SRR8749032Uninduced3.292

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.485
SRR8400027Control-Root12.368

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved