Gene detail

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Gene detail information of Glyur000013s00003246.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05130.1	0	DNA/RNA helicase protein
NR	XP_004493378.1	0	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1-like [Cicer arietinum]
COG	YP_006257963.1	4.00E-37	DNA/RNA helicase [Solitalea canadensis DSM 3403]
Swissprot	tr\|Q9FF61\|SM3L1_ARATH	0	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
trEMBL	tr\|G7L5V8\|G7L5V8_MEDTR	0	DNA/RNA helicase {ECO:0000313\|EMBL:AES81153.2}

Sequence

Transcript Sequence

>Glyur000013s00003246.1
TTCAAATTAAAACACAGAAAGAGAGAGAACAGAAAGAGCACCGTTGTATCATCAAAAAAAAGAAAAAAAAAGAGCACCGTTGTGTGTGTGGGTTTATCAGAGAAGAGAAGAAGAAACGAAAAGGGCATGACACGCTGGTGATGATGATGACAATGGAATCGGAAGAAGAGCAGCAAGGGTCTTCGCAGTCGGAGATGTACCTGGTGGGGTTCGTGGTGGCGAACATAGTGGGCCTGAAGTACTACTCCGGCACAATCAGCGGTCGCGAGATGGTGGGCCTGGTCCGTGAGCCCCTCAACCCATACGACCCAAACGCCATCAAGGTCCTCAACACCCAAACCCTCCAGGTCGGCCACCTCGACCGCCACTCCGCCTCCGTCCTCTCCCCCCTCATCGACTCCCAACTCATCACCGTCGAAGGCATCGTCCGCACCACCACCACCACCCCTCGCTCCTCCTCCTCCTCCTCCACCAACACCAAGTTCCGCATCCCCTGTCAGGTCCACATCTTCTCCCACTTCTCCTCCTTCGACGCCGTCAAAGACGCTTTCTCCATTTCCCCTCTCCGCCTCATCTCCCACTCCGACCCCTCCTTCACCCTCTCCGACTCCATCGCCGTCAAAGAAACCCGCGCCACCGTCATCACCCAAGACCCCGATGAAAACCCCAGCAACAAAACCCTCGACGCCATCTTCCACGAAAACCTCGCCGCCAAAAACCCCCTTCCCGAACCCCTCGACGCTCCCTCCCTCTTCATCAAACCCAAGCTCCTCCAACACCAGAGAGAAGCCCTCGCGTGGCTCCTCCACCGCGAATGCTCCACGGAACTCCCTCCGTTCTGGGAGAGAAGAGACGGCAACAACAACAACAACTACGTCAACGTTCTCACCAATTACCAAACCAATTCAAGACCTAACCCTCTCCGTGGCGGAATCTTCGCCGACGACATGGGTCTCGGGAAGACGTTAACGCTCCTCTCCCTAATCGCTCACGACAAAGCCCAATCCGTCAAGAAACGGCGCTTGNACGTAACGGAGACGGAAACGACGAAGGCGACGTTGGTGGTGTGTCCCCCTTCCGTTATCTCCGCTTGGATAAACCAACTTGAGGAGCACACTTTCCGTGGGTCGTTGAAGACGTACATGTACTATGGTGAGAGAAGGACGAAGGACCCTGAAGAGCTTAGGAAGTATGATCTGGTGTTGACGACTTACTCTACGCTTGGGATTGAGGTGAATTGGGGTCATGCAGCGGCGCAGAAGGTGGAGTGGTGGAGGGTTGTGTTGGATGAAGCGCACACCATCAAGAACCCCAATGCCGCACAGAGCCAAGCGGTTTTCAAGCTGAGGGCTAAGCGAAGGTGGGCTGTTACGGGTACCCCTGTCCTCAATGGGTCCATTGATTTGTTCGCTCTCATGTCTTTCTTGCAATTCGAGCCTTTCTCTATTAGGTGTTATTGGCATTCCTTGGTGCAACGCCATCAAGGCAAGAAAAGAGGCCAATTTCGATTGCAGGCTTTGATGGGTGCAATTGCGTTGCGGAGAACAAAGGACACAGCAATGGTGGGGTTGCCGCCAAAAACTGTGGAGACCGTTTANGTTGAACTTTCTGGTGAAGAACGGCAACTGTATGATGAGGTTAAGGAGGAAGTAAAGGCACTTTTGAGGGATTATGACAATGATGGCAGTATGGTGTATAGTTATTCCACTATGCTAAGTATGATTCTGAGACTTCGCCAAATCTGTACTGACTTCACCATGTGCCCAGCAAATTTCAAGTTTGGTCTATTCCCTTCTGGTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTATTTCGGGTGCTGCAAGATGATGAAGATTTTGATTGTCCAATCTGCATATCTCCTCCAACAGATATTGTAATTACATGTTGTGCTCACATTTTCTGCCGAGGCTGTATTCTGAAAGCTCTACGCCGCAGCAATTCCCTCTGTCCTCTTTGTCGGCGCTCTCTCTCAGAATCCGACTTATTCTCAGCTCCTCCTGAATCTTTTAAGACTGATACTACTGAACCATGCAAATCAGAAAGAAGGCTATCCACCAAAGTGTCTACTCTAATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAACTATAAAATCAGTTGTATTTTCACAATTCCGTAAGATGCTGCTGTTGCTTGAAGAGCCTCTGAAAGCAGCTGGTATTAAGACATTGCGTCTTGATGGGACAATGAATGCTAAACATAGAGCTCGTATCGTCGAGCAATTTCAAGTCTCGGAAATCGATAGGCCCATGGTTTTGCTTGCAAGTCTCAGGGCTTCAAGTGCAGGTATAAATCTTACAGCTTCCTCTAGGGTGTACCTAATGGAGCCATGGTGGAACCCTGCAATTGAAGAACAAGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAGGCTGTGAAGGTTGTTAGATTGATAGCTCAAAATAGCATTGAAGAGAGGATATTAATGTTACAAGAGAAGAAGAAAGGCATAACTATAAAAGGATCTGGGAGGGGATCTAAGGATGTTCTTGGCATAGACAAACATGATCTACGTTTTGTTTTACAGGAATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	469328	473326	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008270 zinc ion binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003246.1	PF08797.6	HIRAN	23	122	4.40E-17
Glyur000013s00003246.1	PF00176.18	SNF2_N	213	536	7.90E-73
Glyur000013s00003246.1	PF13639.1	zf-RING_2	579	619	4.60E-08
Glyur000013s00003246.1	PF00271.26	Helicase_C	689	768	2.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.609
SRR1783600	control	4.648
SRR1783602	moderate drought stress	5.886
SRR1811619	moderate drought stress	5.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.791
DRR006520	Root Summer glycyrrhizin high producing strain	4.645
DRR006521	Root Winter glycyrrhizin high producing strain	4.582
DRR006522	Root Winter glycyrrhizin high producing strain	4.283
DRR006523	Root Summer glycyrrhizin low producing strain	2.696
DRR006524	Root Summer glycyrrhizin low producing strain	3.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.990
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.076

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.671
SRR2868004	Drought Stress(Tissue:root)	6.180
SRR2967015	Control (Tissue:root)	6.337

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.065
SRR9715740	Leave	2.466
SRR9715741	Leave	2.232
SRR9715739	Root	1.353
SRR9715742	Root	2.890
SRR9715743	Root	3.726

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.551
SRR8749028	MeJA induced 9h	4.632
SRR8749029	MeJA induced 9h	3.375
SRR8749030	Uninduced	2.323
SRR8749031	Uninduced	2.456
SRR8749032	Uninduced	2.572

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.429
SRR8400027	Control-Root	5.210