Gene detail information of Glyur000013s00003250.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05140.1 | 1.00E-87 | Transcription elongation factor (TFIIS) family protein |
| NR | XP_004493376.1 | 0 | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b-like isoform X6 [Cicer arietinum] |
| Swissprot | tr|Q9FHK9|MD26B_ARATH | 3.00E-125 | Probable mediator of RNA polymerase II transcription subunit 26b |
| trEMBL | tr|I1N8P6|I1N8P6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G30780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 489517 | 493886 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | IWS1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003250.1 | PF08711.6 | Med26 | 167 | 217 | 7.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.571 |
| SRR1783600 | control | 4.635 |
| SRR1783602 | moderate drought stress | 3.880 |
| SRR1811619 | moderate drought stress | 3.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.385 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.374 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.237 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.429 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.197 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.360 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.731 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.329 |
| SRR2967015 | Control (Tissue:root) | 35.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 88.862 |
| SRR9715740 | Leave | 40.648 |
| SRR9715741 | Leave | 99.471 |
| SRR9715739 | Root | 4.015 |
| SRR9715742 | Root | 32.038 |
| SRR9715743 | Root | 26.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 63.246 |
| SRR8749028 | MeJA induced 9h | 121.048 |
| SRR8749029 | MeJA induced 9h | 81.950 |
| SRR8749030 | Uninduced | 110.487 |
| SRR8749031 | Uninduced | 100.655 |
| SRR8749032 | Uninduced | 63.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.479 |
| SRR8400027 | Control-Root | 23.574 |