Gene detail information of Glyur000013s00003267.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40930.10ubiquitin-specific protease 5
NRXP_003554101.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Glycine max]
Swissprottr|O22207|UBP5_ARATH0Ubiquitin carboxyl-terminal hydrolase 5
trEMBLtr|I1N8N2|I1N8N2_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00013600033607637+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0016579  protein deubiquitination


molecular_function

GO:0004843  thiol-dependent ubiquitin-specific protease activity

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000013s00003267.1PF06337.7DUSP371441.30E-21
Glyur000013s00003267.1PF00443.24UCH3008971.40E-87


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.478
SRR1783600control18.384
SRR1783602moderate drought stress19.303
SRR1811619moderate drought stress19.083

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.282
DRR006520Root Summer glycyrrhizin high producing strain16.097
DRR006521Root Winter glycyrrhizin high producing strain17.959
DRR006522Root Winter glycyrrhizin high producing strain17.831
DRR006523Root Summer glycyrrhizin low producing strain17.794
DRR006524Root Summer glycyrrhizin low producing strain18.083
DRR006525Leaf Summer glycyrrhizin high producing strain9.522
DRR006526Leaf Summer glycyrrhizin high producing strain9.348

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.276
SRR2868004Drought Stress(Tissue:root)18.326
SRR2967015Control (Tissue:root)19.301

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.234
SRR9715740Leave13.405
SRR9715741Leave13.225
SRR9715739Root2.780
SRR9715742Root12.743
SRR9715743Root10.821

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.028
SRR8749028MeJA induced 9h15.697
SRR8749029MeJA induced 9h10.514
SRR8749030Uninduced11.142
SRR8749031Uninduced7.758
SRR8749032Uninduced6.903

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.501
SRR8400027Control-Root20.460

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved