Gene detail information of Glyur000014s00002480.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G00110.10UDP-D-glucuronate 4-epimerase 3
NRXP_003605138.10UDP-glucuronate 4-epimerase [Medicago truncatula]
COGYP_003710181.13.00E-113NAD-dependent epimerase/dehydratase [Waddlia chondrophila WSU 86-1044]
Swissprottr|O81312|GAE3_ARATH0UDP-glucuronate 4-epimerase 3
trEMBLtr|G7JEN3|G7JEN3_MEDTR0UDP-D-glucuronate 4-epimerase {ECO:0000313|EMBL:AES87335.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000142707628389-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08679E5.1.3.6 EC:5.1.3.6 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002480.1PF01370.16Epimerase1003368.20E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.189
SRR1783600control13.988
SRR1783602moderate drought stress11.184
SRR1811619moderate drought stress10.758

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.879
DRR006520Root Summer glycyrrhizin high producing strain23.255
DRR006521Root Winter glycyrrhizin high producing strain18.294
DRR006522Root Winter glycyrrhizin high producing strain16.639
DRR006523Root Summer glycyrrhizin low producing strain26.161
DRR006524Root Summer glycyrrhizin low producing strain20.437
DRR006525Leaf Summer glycyrrhizin high producing strain14.803
DRR006526Leaf Summer glycyrrhizin high producing strain17.627

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.327
SRR2868004Drought Stress(Tissue:root)34.707
SRR2967015Control (Tissue:root)35.515

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.749
SRR9715740Leave21.583
SRR9715741Leave14.674
SRR9715739Root7.127
SRR9715742Root14.842
SRR9715743Root13.750

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.298
SRR8749028MeJA induced 9h12.976
SRR8749029MeJA induced 9h21.942
SRR8749030Uninduced11.834
SRR8749031Uninduced5.792
SRR8749032Uninduced15.596

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.735
SRR8400027Control-Root25.669

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved