Gene detail information of Glyur000014s00002481.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45300.14.00E-34RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
NRXP_003605139.12.82E-443-phosphoshikimate 1-carboxyvinyltransferase [Medicago truncatula]
COGNP_231368.18.00E-273-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961]
Swissprottr|P11043|AROA_PETHY5.00E-413-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBLtr|G7JEN4|G7JEN4_MEDTR1.00E-443-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000144331943843+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00800aroA EC:2.5.1.19 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002481.1PF00275.15EPSP_synthase501151.10E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.958
SRR1783600control19.186
SRR1783602moderate drought stress19.729
SRR1811619moderate drought stress20.280

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.346
DRR006520Root Summer glycyrrhizin high producing strain47.404
DRR006521Root Winter glycyrrhizin high producing strain44.997
DRR006522Root Winter glycyrrhizin high producing strain40.671
DRR006523Root Summer glycyrrhizin low producing strain32.402
DRR006524Root Summer glycyrrhizin low producing strain33.791
DRR006525Leaf Summer glycyrrhizin high producing strain24.041
DRR006526Leaf Summer glycyrrhizin high producing strain25.718

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)84.845
SRR2868004Drought Stress(Tissue:root)67.732
SRR2967015Control (Tissue:root)72.460

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.810
SRR9715740Leave29.952
SRR9715741Leave36.443
SRR9715739Root16.756
SRR9715742Root29.215
SRR9715743Root29.311

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h87.220
SRR8749028MeJA induced 9h50.240
SRR8749029MeJA induced 9h62.612
SRR8749030Uninduced208.692
SRR8749031Uninduced120.098
SRR8749032Uninduced98.465

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.359
SRR8400027Control-Root48.870

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved