Gene detail information of Glyur000014s00002482.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45300.16.00E-29RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
NRXP_003605139.12.03E-383-phosphoshikimate 1-carboxyvinyltransferase [Medicago truncatula]
COGYP_004467034.12.00E-163-phosphoshikimate 1-carboxyvinyltransferase [Alteromonas sp. SN2]
Swissprottr|P11043|AROA_PETHY8.00E-363-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBLtr|G7JEN4|G7JEN4_MEDTR8.00E-393-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000144898549306-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00800aroA EC:2.5.1.19 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002482.1PF00275.15EPSP_synthase2717.40E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control163.204
SRR1783600control162.365
SRR1783602moderate drought stress174.673
SRR1811619moderate drought stress166.805

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain105.693
DRR006520Root Summer glycyrrhizin high producing strain95.461
DRR006521Root Winter glycyrrhizin high producing strain103.789
DRR006522Root Winter glycyrrhizin high producing strain97.222
DRR006523Root Summer glycyrrhizin low producing strain119.344
DRR006524Root Summer glycyrrhizin low producing strain117.639
DRR006525Leaf Summer glycyrrhizin high producing strain68.297
DRR006526Leaf Summer glycyrrhizin high producing strain63.614

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)244.556
SRR2868004Drought Stress(Tissue:root)218.964
SRR2967015Control (Tissue:root)222.195

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave101.642
SRR9715740Leave78.684
SRR9715741Leave91.549
SRR9715739Root51.129
SRR9715742Root94.640
SRR9715743Root97.811

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h172.532
SRR8749028MeJA induced 9h147.733
SRR8749029MeJA induced 9h121.491
SRR8749030Uninduced373.272
SRR8749031Uninduced279.033
SRR8749032Uninduced165.398

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root113.337
SRR8400027Control-Root108.415

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved