Gene detail information of Glyur000014s00002484.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45300.11.00E-85RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
NRXP_003605139.19.45E-1483-phosphoshikimate 1-carboxyvinyltransferase [Medicago truncatula]
COGYP_001357866.15.00E-503-phosphoshikimate 1-carboxyvinyltransferase [Sulfurovum sp. NBC37-1]
Swissprottr|P05466|AROA_ARATH1.00E-1113-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBLtr|G7JEN4|G7JEN4_MEDTR4.00E-1483-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000145566363709-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00800aroA EC:2.5.1.19 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002484.2PF00275.15EPSP_synthase892345.30E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.334
SRR1783600control38.164
SRR1783602moderate drought stress37.217
SRR1811619moderate drought stress37.500

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.009
DRR006520Root Summer glycyrrhizin high producing strain32.678
DRR006521Root Winter glycyrrhizin high producing strain30.806
DRR006522Root Winter glycyrrhizin high producing strain30.032
DRR006523Root Summer glycyrrhizin low producing strain32.533
DRR006524Root Summer glycyrrhizin low producing strain33.307
DRR006525Leaf Summer glycyrrhizin high producing strain17.196
DRR006526Leaf Summer glycyrrhizin high producing strain17.167

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)83.246
SRR2868004Drought Stress(Tissue:root)66.377
SRR2967015Control (Tissue:root)72.765

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.278
SRR9715740Leave21.459
SRR9715741Leave25.265
SRR9715739Root21.763
SRR9715742Root42.559
SRR9715743Root38.616

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.532
SRR8749028MeJA induced 9h48.747
SRR8749029MeJA induced 9h19.886
SRR8749030Uninduced58.064
SRR8749031Uninduced38.826
SRR8749032Uninduced20.843

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.544
SRR8400027Control-Root57.232

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved