Gene detail information of Glyur000014s00002485.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45300.14.00E-14RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
NRXP_003605139.11.16E-203-phosphoshikimate 1-carboxyvinyltransferase [Medicago truncatula]
Swissprottr|P11043|AROA_PETHY1.00E-183-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBLtr|G7JEN4|G7JEN4_MEDTR4.00E-213-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000145762160156+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00800aroA EC:2.5.1.19 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

molecular_function

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002485.1PF00275.15EPSP_synthase1494.40E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.845
SRR1783600control12.556
SRR1783602moderate drought stress11.823
SRR1811619moderate drought stress10.796

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.745
DRR006520Root Summer glycyrrhizin high producing strain13.578
DRR006521Root Winter glycyrrhizin high producing strain14.077
DRR006522Root Winter glycyrrhizin high producing strain15.109
DRR006523Root Summer glycyrrhizin low producing strain7.222
DRR006524Root Summer glycyrrhizin low producing strain8.158
DRR006525Leaf Summer glycyrrhizin high producing strain8.955
DRR006526Leaf Summer glycyrrhizin high producing strain8.361

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.006
SRR2868004Drought Stress(Tissue:root)10.495
SRR2967015Control (Tissue:root)14.088

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.913
SRR9715740Leave10.715
SRR9715741Leave11.911
SRR9715739Root8.397
SRR9715742Root15.993
SRR9715743Root17.078

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.178
SRR8749028MeJA induced 9h17.876
SRR8749029MeJA induced 9h11.319
SRR8749030Uninduced37.993
SRR8749031Uninduced21.603
SRR8749032Uninduced19.062

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.181
SRR8400027Control-Root12.974

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved