Gene detail information of Glyur000014s00002488.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45290.10Transketolase
NRXP_007153461.10hypothetical protein PHAVU_003G037400g [Phaseolus vulgaris]
COGYP_007110498.10transketolase [Geitlerinema sp. PCC 7407]
Swissprottr|Q43848|TKTC_SOLTU0Transketolase, chloroplastic (Precursor)
trEMBLtr|V7C855|V7C855_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW25455.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000147557279511-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00615E2.2.1.1, tktA, tktB EC:2.2.1.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710
Biosynthesis of ansamycinsmap01051


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004802  transketolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002488.1PF00456.16Transketolase_N781651.30E-37
Glyur000014s00002488.1PF00456.16Transketolase_N1663871.10E-86
Glyur000014s00002488.1PF02779.19Transket_pyr4055753.90E-43
Glyur000014s00002488.1PF02780.15Transketolase_C5997064.60E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control95.976
SRR1783600control96.471
SRR1783602moderate drought stress71.000
SRR1811619moderate drought stress70.963

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain65.725
DRR006520Root Summer glycyrrhizin high producing strain64.992
DRR006521Root Winter glycyrrhizin high producing strain46.810
DRR006522Root Winter glycyrrhizin high producing strain44.829
DRR006523Root Summer glycyrrhizin low producing strain33.608
DRR006524Root Summer glycyrrhizin low producing strain33.802
DRR006525Leaf Summer glycyrrhizin high producing strain16.051
DRR006526Leaf Summer glycyrrhizin high producing strain16.105

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)389.838
SRR2868004Drought Stress(Tissue:root)337.954
SRR2967015Control (Tissue:root)283.697

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave61.507
SRR9715740Leave50.995
SRR9715741Leave67.211
SRR9715739Root158.010
SRR9715742Root181.925
SRR9715743Root181.389

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h143.797
SRR8749028MeJA induced 9h137.583
SRR8749029MeJA induced 9h94.181
SRR8749030Uninduced156.031
SRR8749031Uninduced102.575
SRR8749032Uninduced90.989

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root219.041
SRR8400027Control-Root192.821

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved