Gene detail information of Glyur000014s00002499.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03750.1 | 0 | switch 2 |
| NR | XP_004505563.1 | 0 | PREDICTED: putative DNA repair and recombination protein RAD26-like, partial [Cicer arietinum] |
| COG | YP_007365255.1 | 2.00E-62 | SNF2 family domain-containing protein [Lawsonia intracellularis N343] |
| Swissprot | tr|F4I2H2|CHR9_ARATH | 0 | Switch 2 {ECO:0000312|EMBL:AEE27606.1} |
| trEMBL | tr|I1LS51|I1LS51_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G13180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 133339 | 138388 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002499.1 | PF00176.18 | SNF2_N | 149 | 414 | 8.70E-57 |
| Glyur000014s00002499.1 | PF00271.26 | Helicase_C | 568 | 647 | 1.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.787 |
| SRR1783600 | control | 3.869 |
| SRR1783602 | moderate drought stress | 6.609 |
| SRR1811619 | moderate drought stress | 6.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.752 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.642 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.882 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.763 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.858 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.881 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.223 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.447 |
| SRR2967015 | Control (Tissue:root) | 10.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.075 |
| SRR9715740 | Leave | 4.810 |
| SRR9715741 | Leave | 4.840 |
| SRR9715739 | Root | 0.688 |
| SRR9715742 | Root | 3.492 |
| SRR9715743 | Root | 3.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.245 |
| SRR8749028 | MeJA induced 9h | 5.624 |
| SRR8749029 | MeJA induced 9h | 3.348 |
| SRR8749030 | Uninduced | 3.923 |
| SRR8749031 | Uninduced | 5.614 |
| SRR8749032 | Uninduced | 2.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.589 |
| SRR8400027 | Control-Root | 7.294 |