Gene detail

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Gene detail information of Glyur000014s00002532.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03840.2	1.00E-106	C2H2 and C2HC zinc fingers superfamily protein
NR	XP_003540944.2	0	PREDICTED: zinc finger protein MAGPIE-like [Glycine max]
Swissprot	tr\|Q9ZWA6\|IDD3_ARATH	1.00E-133	Zinc finger protein MAGPIE {ECO:0000303\|PubMed:17785527}
trEMBL	tr\|I1LS81\|I1LS81_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G13810.1}

Sequence

Transcript Sequence

>Glyur000014s00002532.1
ATGGATCATGAAGGAGAAATGATCACAAATATTGGTTTCCCTCAGAACCAAACTACTACTGCTGCATCTAAATCTAATAATCCTGAAGCTGAAGTGATAGCCTTATCGCCAAAGACTTTGATGGCCACAAACAGATTCTTGTGTGAGACATGTGGGAAGGGTTTCCAAAGGGATCAGAATCTTCAACTTCATCGACGTGGACACAACCTTCCATGGAAGCTGAAGCAGAGGACTAACAAGGAGCCAAAGAAGAGAGTTTATGTCTGCCCTGAGAAGACCTGTGTCCACCACGACCCTTCAAGGGCNCTTGGAGACTTGACTGGGATAAAAAAGCACTTTTGCAGGAAGCACGGGGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGCTATGCTGTTCAGTCAGACTGGAAAGCCCACTCCAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGAGTAAATGCAGCATCAGAAATAAGCAACTCCTTAGGGGGTAACATTGGTTACAACATAATGGGAACATCTCTAGGCCCTAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCAAACACTACTGAAGAAACAAGCAATCAAACATCCAGGGGTCTATCCCTTTGGATGGGCCAAGAAACAATGACCATTGGCAATAATATGCATGATCAGATTCATCAACTTGGCTCAGCCACAAGCTCAATATATAGTACTGGGAACCCACTTGTCCAGTGCTCAAATCCTCCTCCACAACACTCTAATTATCAGCTAAATTGGGTGTTTGGAACTAAGCTTAATTCCTCCAATGACAACAACCAAGAGCTAACTAGCACTACCACTTCAATTCCACTAGGCAATATTGTTAAGGATGCTACTACAAGCCAACCTATTCCTTCTTTGTATAGCTCCCAACACCAATTACACCAAACAATATCCAATTCTTCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCTCAAATTGGAGCAACCTCAACCGATCACCCATCATTCCTAGGGAGTTTAGGCTTGAAATGCAGTGCTAATAACAACATCAGTGATGGGAGCAAGTTTAGTGGCATATTTGGTCCAAGTTCAGTACTCGTTAGTCTTGGGAGTGAGGCAGAGAACTCTGCATGTGACTTGTCACAAATGCACCACCCTGCCAAACGCAGACACGTGCAGAATATTGAAGAGAATAATGGAGGAGGGGGGCAAACTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGATTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	314972	317121	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002532.1	PF00096.21	zf-C2H2	48	68	0.029

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.010
SRR1783600	control	2.069
SRR1783602	moderate drought stress	1.416
SRR1811619	moderate drought stress	1.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.099
DRR006520	Root Summer glycyrrhizin high producing strain	1.090
DRR006521	Root Winter glycyrrhizin high producing strain	0.241
DRR006522	Root Winter glycyrrhizin high producing strain	0.235
DRR006523	Root Summer glycyrrhizin low producing strain	2.415
DRR006524	Root Summer glycyrrhizin low producing strain	2.425
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.401
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.377

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	28.598
SRR2868004	Drought Stress(Tissue:root)	27.359
SRR2967015	Control (Tissue:root)	39.261

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.881
SRR9715740	Leave	0.801
SRR9715741	Leave	1.495
SRR9715739	Root	0.265
SRR9715742	Root	0.947
SRR9715743	Root	0.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.103
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.046
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.560
SRR8400027	Control-Root	1.801