Gene detail information of Glyur000014s00002546.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G06290.10acyl-CoA oxidase 3
NRXP_004505527.10PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Cicer arietinum]
COGYP_005372970.11.00E-144putative acyl-CoA dehydrogenase [Corallococcus coralloides DSM 2259]
Swissprottr|P0CZ23|ACOX3_ARATH0Acyl-coenzyme A oxidase 3, peroxisomal (Precursor)
trEMBLtr|G7JUZ2|G7JUZ2_MEDTR0Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00014380973386601-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0006635  fatty acid beta-oxidation

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005777  peroxisome


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0003997  acyl-CoA oxidase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002546.1PF02770.14Acyl-CoA_dh_M1862424.50E-12
Glyur000014s00002546.1PF00441.19Acyl-CoA_dh_13274842.30E-09
Glyur000014s00002546.1PF01756.14ACOX5296603.00E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.228
SRR1783600control13.337
SRR1783602moderate drought stress17.365
SRR1811619moderate drought stress17.287

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.361
DRR006520Root Summer glycyrrhizin high producing strain21.951
DRR006521Root Winter glycyrrhizin high producing strain16.054
DRR006522Root Winter glycyrrhizin high producing strain15.761
DRR006523Root Summer glycyrrhizin low producing strain20.814
DRR006524Root Summer glycyrrhizin low producing strain20.468
DRR006525Leaf Summer glycyrrhizin high producing strain25.833
DRR006526Leaf Summer glycyrrhizin high producing strain25.808

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.759
SRR2868004Drought Stress(Tissue:root)65.351
SRR2967015Control (Tissue:root)60.744

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.398
SRR9715740Leave35.825
SRR9715741Leave46.158
SRR9715739Root14.379
SRR9715742Root23.535
SRR9715743Root25.498

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.188
SRR8749028MeJA induced 9h38.451
SRR8749029MeJA induced 9h25.762
SRR8749030Uninduced59.261
SRR8749031Uninduced55.898
SRR8749032Uninduced33.407

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.626
SRR8400027Control-Root45.485

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved