Gene detail information of Glyur000014s00002558.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42360.1 | 1.00E-22 | RING/U-box superfamily protein |
| NR | XP_003526242.1 | 1.32E-48 | PREDICTED: RING-H2 finger protein ATL40-like [Glycine max] |
| Swissprot | tr|Q9SLC3|ATL41_ARATH | 1.00E-29 | E3 ubiquitin-protein ligase ATL41 |
| trEMBL | tr|I1KEU3|I1KEU3_SOYBN | 5.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G43730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 441502 | 442128 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002558.1 | PF13639.1 | zf-RING_2 | 89 | 132 | 1.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.137 |
| SRR1783600 | control | 1.592 |
| SRR1783602 | moderate drought stress | 0.725 |
| SRR1811619 | moderate drought stress | 0.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.174 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.161 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.135 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.112 |
| SRR2967015 | Control (Tissue:root) | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.286 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.104 |
| SRR9715739 | Root | 0.504 |
| SRR9715742 | Root | 1.390 |
| SRR9715743 | Root | 0.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.482 |
| SRR8400027 | Control-Root | 0.516 |