Gene detail

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Gene detail information of Glyur000014s00002559.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15030.3	1.00E-48	TCP family transcription factor 4
NR	XP_004505518.1	7.66E-133	PREDICTED: transcription factor TCP4-like [Cicer arietinum]
Swissprot	tr\|Q8LPR5\|TCP4_ARATH	3.00E-61	Transcription factor TCP4
trEMBL	tr\|K7M2K4\|K7M2K4_SOYBN	8.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G36840.3}

Sequence

Transcript Sequence

>Glyur000014s00002559.1
ATGGCAGGTGTTGGCGTTTTGGGACCAGCAGCAGCAGGCAGCAGTAGCAGTGGTAGAATTGTCACAATTCAAGGCTGTGGACAGCTGCACAAGCAACTACAGTTAAGAGCAACAAAAACCAAAGCAAAGGAGAGGAGAAGGAAAGAAAATAAAAAGGGGATGAGGAGCAGTGGAGGAGAGATAGTTCAAGTGGAAGGAGGTCACATTGTTNGATCCACAGGTAGAAAAGATCGTCACAGCAAGGTTTACACTTCGAAAGGCCCTCGTGATCGCAGGGTACGACTCTCAGCACACACAGCCATCGAGTTCTATGATGTTCAAGACCGTCTTGGCTATGACCGACCCAGCAAGGCCGTTGATTGGCTNATCAAGAAGGCAAAGCCTTCAATTGACAAGCTTGCTGAGCTTCCTCCATGGAACCCACCAATTCATCCTGATCAAAGGCTACCTCAAGAGGATCAAGAGCACATGGCCAATATTAATGAAGAACAATCAGAGTCTTCTGCAGCAGGTTACAATAATTTAATCCATCTCCAACAAAGGCANTTAGGTGGTGAGAACAACCAAGGTAACCACCATTCAGCCTTCATTTCACCACATGTTGTTGTTGACACTAACCCTATCCCCTTCTTTCCCACAACCTCTGCTACTTGTTCCTCCAACATCAATTTCCAGAGCTACCCACCTGATATAATCACAAGAACCAACAACCCCACTCAAGATCTTGGCCTCTCTCTTCATTCTTTCCAACACCACCCTGGCTTGATTCATCCTTGGCAATCACAACAAGCAGCAGGTGGTGAAGAAACTGAAGAAAACCATGCTCCTTCCAATGAACAACAACACCAAACACTTTTTGCAGCTGGTTCAACTACTACTCCCGTTGGGTTTGAGAACCAGTATCAGAGAATTGTGACTTGGGACAGTGAAGTAACTGCGGATCATGTAAACAAAGTGGGGTTCATGCAGGTGGTTAACTCGCAGCAATTTTCAGCTTCAGAATATTCTCAGAGTGGGACCCTTCACTCCAGTTTTTCACCCTCAGCTCGATCTAATTGGAATGACATTGTAATGGCTGCTTCCTCGGAGCATCATCACAGGTCCCAACAACAAGTTCACCACCAAGCTTCGATCTTTGGAAGCAGGTTTGTTTCTGATGGATTAGCAGGGTTCTGCAATATTCCTGATAGAATTGATCAAGGTGGTGAGGAAGAGGAGGACAATGGAGTTGCTTCCAACAGGCCATCTTCTGCTTCTACTAGTTCTCAACATTGACCCCAAATTACAAGAAATTGAGCAATGCTATTGCTGGGGTCTTCCTGTCAGGTATTGTTCCAATGATAATGTTAATTAGCACAAAAGTTGTCATCTTTTGCTTCATGGAACACATGATAAAACTCAGCAAAGC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	444799	446596	-

Gene family

Gene family	subfamily
Transcription Factors Family	TCP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002559.1	PF03634.8	TCP	73	171	5.80E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.483
SRR1783600	control	1.543
SRR1783602	moderate drought stress	0.790
SRR1811619	moderate drought stress	0.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.154
DRR006520	Root Summer glycyrrhizin high producing strain	0.153
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.194
DRR006524	Root Summer glycyrrhizin low producing strain	0.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.567
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.271
SRR2868004	Drought Stress(Tissue:root)	2.275
SRR2967015	Control (Tissue:root)	2.002

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.940
SRR9715740	Leave	12.376
SRR9715741	Leave	10.003
SRR9715739	Root	0.141
SRR9715742	Root	1.278
SRR9715743	Root	0.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.094
SRR8749029	MeJA induced 9h	0.217
SRR8749030	Uninduced	0.090
SRR8749031	Uninduced	0.300
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.597
SRR8400027	Control-Root	1.340