Gene detail information of Glyur000014s00002571.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58610.30ketol-acid reductoisomerase
NRXP_003607572.10Ketol-acid reductoisomerase [Medicago truncatula]
COGYP_003690422.10Ketol-acid reductoisomerase [Desulfurivibrio alkaliphilus AHT2]
Swissprottr|O82043|ILV5_PEA0Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBLtr|G7JCK0|G7JCK0_MEDTR0Ketol-acid reductoisomerase {ECO:0000256|PIRNR:PIRNR000118}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00014508783514404+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00053ilvC EC:1.1.1.86 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0008652  cellular amino acid biosynthetic process

GO:0009082  branched-chain amino acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004455  ketol-acid reductoisomerase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002571.1PF07991.7IlvN1112852.90E-31
Glyur000014s00002571.1PF01450.14IlvC2934387.20E-17
Glyur000014s00002571.1PF01450.14IlvC4515771.40E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control86.326
SRR1783600control86.350
SRR1783602moderate drought stress103.962
SRR1811619moderate drought stress102.779

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain107.790
DRR006520Root Summer glycyrrhizin high producing strain106.865
DRR006521Root Winter glycyrrhizin high producing strain33.821
DRR006522Root Winter glycyrrhizin high producing strain33.119
DRR006523Root Summer glycyrrhizin low producing strain111.238
DRR006524Root Summer glycyrrhizin low producing strain110.689
DRR006525Leaf Summer glycyrrhizin high producing strain93.953
DRR006526Leaf Summer glycyrrhizin high producing strain93.625

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)116.702
SRR2868004Drought Stress(Tissue:root)100.884
SRR2967015Control (Tissue:root)87.453

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave129.453
SRR9715740Leave150.623
SRR9715741Leave122.193
SRR9715739Root122.187
SRR9715742Root150.886
SRR9715743Root148.395

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h86.005
SRR8749028MeJA induced 9h55.293
SRR8749029MeJA induced 9h63.375
SRR8749030Uninduced14.138
SRR8749031Uninduced6.206
SRR8749032Uninduced13.742

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root124.584
SRR8400027Control-Root105.998

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved