Gene detail information of Glyur000014s00002578.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G53310.30phosphoenolpyruvate carboxylase 1
NRXP_003527347.10PREDICTED: phosphoenolpyruvate carboxylase-like [Glycine max]
COGYP_741106.10phosphoenolpyruvate carboxylase [Alkalilimnicola ehrlichii MLHE-1]
Swissprottr|Q9FV65|CAPPC_FLATR0Phosphoenolpyruvate carboxylase 2
trEMBLtr|I1KEN4|I1KEN4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G43050.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00014541318547438-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01595ppc EC:4.1.1.31 Carbon metabolism map01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710
Carbon fixation pathways in prokaryotesmap00720
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0015977  carbon fixation


molecular_function

GO:0003824  catalytic activity

GO:0008964  phosphoenolpyruvate carboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002578.1PF00311.12PEPcase1649661.10E-304


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.655
SRR1783600control6.716
SRR1783602moderate drought stress6.451
SRR1811619moderate drought stress6.384

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.659
DRR006520Root Summer glycyrrhizin high producing strain3.530
DRR006521Root Winter glycyrrhizin high producing strain3.327
DRR006522Root Winter glycyrrhizin high producing strain3.212
DRR006523Root Summer glycyrrhizin low producing strain8.682
DRR006524Root Summer glycyrrhizin low producing strain8.717
DRR006525Leaf Summer glycyrrhizin high producing strain0.296
DRR006526Leaf Summer glycyrrhizin high producing strain0.303

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.734
SRR2868004Drought Stress(Tissue:root)5.148
SRR2967015Control (Tissue:root)7.707

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.632
SRR9715740Leave0.340
SRR9715741Leave0.445
SRR9715739Root5.851
SRR9715742Root6.228
SRR9715743Root4.946

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.573
SRR8749028MeJA induced 9h1.839
SRR8749029MeJA induced 9h1.885
SRR8749030Uninduced0.758
SRR8749031Uninduced0.375
SRR8749032Uninduced0.521

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.988
SRR8400027Control-Root20.094

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved