Gene detail information of Glyur000014s00002580.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25140.1 | 0 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_003552108.1 | 0 | PREDICTED: galacturonosyltransferase 8-like [Glycine max] |
| COG | YP_003549730.1 | 5.00E-07 | glycosyl transferase family protein [Coraliomargarita akajimensis DSM 45221] |
| Swissprot | tr|Q9LSG3|GAUT8_ARATH | 0 | Galacturonosyltransferase 8 |
| trEMBL | tr|I1N201|I1N201_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G33210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 568874 | 572257 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13648 | GAUT | EC:2.4.1.43 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002580.1 | PF01501.15 | Glyco_transf_8 | 257 | 533 | 2.40E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 79.965 |
| SRR1783600 | control | 80.472 |
| SRR1783602 | moderate drought stress | 66.323 |
| SRR1811619 | moderate drought stress | 66.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.580 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 54.021 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 240.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 234.194 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 75.428 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.650 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.357 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 69.279 |
| SRR2868004 | Drought Stress(Tissue:root) | 57.791 |
| SRR2967015 | Control (Tissue:root) | 59.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 71.142 |
| SRR9715740 | Leave | 42.986 |
| SRR9715741 | Leave | 55.848 |
| SRR9715739 | Root | 60.017 |
| SRR9715742 | Root | 88.653 |
| SRR9715743 | Root | 83.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 99.937 |
| SRR8749028 | MeJA induced 9h | 61.711 |
| SRR8749029 | MeJA induced 9h | 41.447 |
| SRR8749030 | Uninduced | 18.236 |
| SRR8749031 | Uninduced | 9.573 |
| SRR8749032 | Uninduced | 10.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 65.545 |
| SRR8400027 | Control-Root | 89.627 |