Gene detail information of Glyur000015s00000755.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G28860.1 | 0 | ATP binding cassette subfamily B19 |
NR | AES72696.2 | 0 | ABC transporter B family protein [Medicago truncatula] |
COG | YP_005367043.1 | 2.00E-111 | efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259] |
Swissprot | tr|Q9LJX0|AB19B_ARATH | 0 | ABC transporter B family member 19 |
trEMBL | tr|G7J9Q4|G7J9Q4_MEDTR | 0 | ABC transporter B family protein {ECO:0000313|EMBL:AES72696.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00015 | 73090 | 78365 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K05658 | ABCB1, CD243 | EC:3.6.3.44 | ABC transporters | map02010 |
Bile secretion | map04976 | |||
MicroRNAs in cancer | map05206 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000015s00000755.1 | PF00664.18 | ABC_membrane | 53 | 324 | 3.00E-36 |
Glyur000015s00000755.1 | PF00005.22 | ABC_tran | 392 | 541 | 3.70E-34 |
Glyur000015s00000755.1 | PF00664.18 | ABC_membrane | 685 | 945 | 1.80E-41 |
Glyur000015s00000755.1 | PF00005.22 | ABC_tran | 1025 | 1174 | 7.00E-37 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 1.867 |
SRR1783600 | control | 1.954 |
SRR1783602 | moderate drought stress | 3.564 |
SRR1811619 | moderate drought stress | 3.801 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 2.239 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 2.508 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 2.469 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 2.538 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 1.444 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 1.491 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.983 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.927 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 7.087 |
SRR2868004 | Drought Stress(Tissue:root) | 4.798 |
SRR2967015 | Control (Tissue:root) | 6.698 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 1.532 |
SRR9715740 | Leave | 1.241 |
SRR9715741 | Leave | 1.011 |
SRR9715739 | Root | 0.052 |
SRR9715742 | Root | 0.248 |
SRR9715743 | Root | 0.268 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 3.183 |
SRR8749028 | MeJA induced 9h | 4.924 |
SRR8749029 | MeJA induced 9h | 1.722 |
SRR8749030 | Uninduced | 3.796 |
SRR8749031 | Uninduced | 3.724 |
SRR8749032 | Uninduced | 3.018 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 1.499 |
SRR8400027 | Control-Root | 1.693 |