Gene detail information of Glyur000015s00000755.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28860.10ATP binding cassette subfamily B19
NRAES72696.20ABC transporter B family protein [Medicago truncatula]
COGYP_005367043.12.00E-111efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9LJX0|AB19B_ARATH0ABC transporter B family member 19
trEMBLtr|G7J9Q4|G7J9Q4_MEDTR0ABC transporter B family protein {ECO:0000313|EMBL:AES72696.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000157309078365+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000755.1PF00664.18ABC_membrane533243.00E-36
Glyur000015s00000755.1PF00005.22ABC_tran3925413.70E-34
Glyur000015s00000755.1PF00664.18ABC_membrane6859451.80E-41
Glyur000015s00000755.1PF00005.22ABC_tran102511747.00E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.867
SRR1783600control1.954
SRR1783602moderate drought stress3.564
SRR1811619moderate drought stress3.801

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.239
DRR006520Root Summer glycyrrhizin high producing strain2.508
DRR006521Root Winter glycyrrhizin high producing strain2.469
DRR006522Root Winter glycyrrhizin high producing strain2.538
DRR006523Root Summer glycyrrhizin low producing strain1.444
DRR006524Root Summer glycyrrhizin low producing strain1.491
DRR006525Leaf Summer glycyrrhizin high producing strain1.983
DRR006526Leaf Summer glycyrrhizin high producing strain1.927

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.087
SRR2868004Drought Stress(Tissue:root)4.798
SRR2967015Control (Tissue:root)6.698

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.532
SRR9715740Leave1.241
SRR9715741Leave1.011
SRR9715739Root0.052
SRR9715742Root0.248
SRR9715743Root0.268

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.183
SRR8749028MeJA induced 9h4.924
SRR8749029MeJA induced 9h1.722
SRR8749030Uninduced3.796
SRR8749031Uninduced3.724
SRR8749032Uninduced3.018

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.499
SRR8400027Control-Root1.693