Gene detail information of Glyur000015s00000778.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G54160.16.00E-170O-methyltransferase 1
NRAEV93478.10caffeic acid O-methyltransferase [Caragana korshinskii]
COGYP_007063273.19.00E-44hydroxyneurosporene-O-methyltransferase [Synechococcus sp. PCC 6312]
Swissprottr|P28002|COMT1_MEDSA0Caffeic acid 3-O-methyltransferase
trEMBLtr|V9I5V1|V9I5V1_9FABA0Caffeic acid O-methyltransferase {ECO:0000313|EMBL:AEV93478.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00015189376193394+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13066E2.1.1.68, COMT EC:2.1.1.68 Phenylpropanoid biosynthesis map00940


Gene Ontology

molecular_function

GO:0008168  methyltransferase activity

GO:0008171  O-methyltransferase activity

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000778.1PF08100.6Dimerisation34861.30E-22
Glyur000015s00000778.1PF00891.13Methyltransf_21053419.10E-104


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control180.523
SRR1783600control179.810
SRR1783602moderate drought stress98.348
SRR1811619moderate drought stress95.695

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain123.719
DRR006520Root Summer glycyrrhizin high producing strain121.405
DRR006521Root Winter glycyrrhizin high producing strain0.584
DRR006522Root Winter glycyrrhizin high producing strain0.760
DRR006523Root Summer glycyrrhizin low producing strain88.892
DRR006524Root Summer glycyrrhizin low producing strain87.773
DRR006525Leaf Summer glycyrrhizin high producing strain79.954
DRR006526Leaf Summer glycyrrhizin high producing strain78.122

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)490.928
SRR2868004Drought Stress(Tissue:root)367.971
SRR2967015Control (Tissue:root)327.124

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave254.711
SRR9715740Leave207.322
SRR9715741Leave319.746
SRR9715739Root174.182
SRR9715742Root224.190
SRR9715743Root215.153

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h197.267
SRR8749028MeJA induced 9h247.668
SRR8749029MeJA induced 9h147.622
SRR8749030Uninduced150.956
SRR8749031Uninduced71.432
SRR8749032Uninduced52.449

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root331.004
SRR8400027Control-Root352.371

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved