Gene detail information of Glyur000015s00000785.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24520.3 | 8.00E-161 | Transducin/WD40 repeat-like superfamily protein |
| NR | BAH28880.1 | 0 | WD40 repeats protein LjTTG1 [Lotus japonicus] |
| COG | YP_003300732.1 | 2.00E-06 | metallophosphoesterase [Thermomonospora curvata DSM 43183] |
| Swissprot | tr|Q9XGN1|TTG1_ARATH | 0 | Protein TRANSPARENT TESTA GLABRA 1 |
| trEMBL | tr|C0A1G9|C0A1G9_LOTJA | 0 | WD40 repeats protein LjTTG1 {ECO:0000313|EMBL:BAH28880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 225466 | 228833 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000785.1 | PF00400.27 | WD40 | 169 | 203 | 9.20E-06 |
| Glyur000015s00000785.1 | PF00400.27 | WD40 | 256 | 294 | 0.00018 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.576 |
| SRR1783600 | control | 55.749 |
| SRR1783602 | moderate drought stress | 42.974 |
| SRR1811619 | moderate drought stress | 42.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.191 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.050 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 45.553 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.661 |
| SRR2967015 | Control (Tissue:root) | 35.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 55.852 |
| SRR9715740 | Leave | 38.474 |
| SRR9715741 | Leave | 62.563 |
| SRR9715739 | Root | 59.309 |
| SRR9715742 | Root | 57.244 |
| SRR9715743 | Root | 57.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.521 |
| SRR8749028 | MeJA induced 9h | 76.799 |
| SRR8749029 | MeJA induced 9h | 51.559 |
| SRR8749030 | Uninduced | 84.083 |
| SRR8749031 | Uninduced | 64.163 |
| SRR8749032 | Uninduced | 51.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 34.181 |
| SRR8400027 | Control-Root | 30.416 |