Gene detail information of Glyur000015s00000834.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72050.2 | 1.00E-104 | transcription factor IIIA |
| NR | XP_004498336.1 | 0 | PREDICTED: transcription factor IIIA-like [Cicer arietinum] |
| trEMBL | tr|V7BBS1|V7BBS1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW14313.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 481585 | 484107 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000834.1 | PF13894.1 | zf-C2H2_4 | 66 | 105 | 0.83 |
| Glyur000015s00000834.1 | PF00096.21 | zf-C2H2 | 150 | 174 | 0.00011 |
| Glyur000015s00000834.1 | PF00096.21 | zf-C2H2 | 258 | 283 | 0.0019 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.053 |
| SRR1783600 | control | 26.295 |
| SRR1783602 | moderate drought stress | 48.133 |
| SRR1811619 | moderate drought stress | 48.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.425 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.798 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.570 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.450 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.286 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.141 |
| SRR2967015 | Control (Tissue:root) | 35.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.218 |
| SRR9715740 | Leave | 36.835 |
| SRR9715741 | Leave | 27.370 |
| SRR9715739 | Root | 2.650 |
| SRR9715742 | Root | 8.565 |
| SRR9715743 | Root | 6.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.326 |
| SRR8749028 | MeJA induced 9h | 33.977 |
| SRR8749029 | MeJA induced 9h | 16.419 |
| SRR8749030 | Uninduced | 11.569 |
| SRR8749031 | Uninduced | 6.214 |
| SRR8749032 | Uninduced | 6.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.722 |
| SRR8400027 | Control-Root | 26.573 |