Gene detail

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Gene detail information of Glyur000015s00000839.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54390.1	3.00E-46	sequence-specific DNA binding transcription factors
NR	XP_007148925.1	1.58E-157	hypothetical protein PHAVU_005G025700g [Phaseolus vulgaris]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	4.00E-19	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|V7BSI0\|V7BSI0_PHAVU	6.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:ESW20919.1}

Sequence

Transcript Sequence

>Glyur000015s00000839.1
AACGCTAACAGCCAAATAAACTCAACCAAAACCATAAACAAAACCACAACACACACACACACTATATTGCTCACAATCACATTACACCATCAAGCACCACCACCACCACCTCTCTCCCACACACACANAAAAGCAAGAGAAAATGAAAAGTTAAGGCATTGACATCATTAACTTATTTGACAAAAAGTGAACCATTTTTCCCCCCTTTCCCAATCACCCTCTATTGCTAGCCATTCTTTTCTTTTTTTATTTCTTTTCAGAAAAGAACAAAAGAAATTTCACCTTCACCCTCTTTCTAATGCTAGTGGTTGTGTCCCTCTTGTTACTACCCTTTCTTATTCTTAGACTCATGTAGTTGAACTTTGGAGAGCATGTTAGCAGCTAAACACAAGGGGTTAAAAAAATTGTAGTACATGGTGGGATACGAGAGATGGATGACAAAGCAGAAAACCAACACCATAACCACCCATCTCTCCTCCCTAATCATCATCATCATAACACCACCACAAATACTACCACCACCATCAAAGCCAAGGAAGAGTCTCCAAGAAAACAACAACAACAACAACAAGCAATTAATGTTGTTGTTGGTGGAAGTAGCAGTGCTANTGCTAGTGAGAGGCTGAAGAGGGATGAGTGGAGTGAAGGGGCTGTGTCTACCCTTCTTGAGGCCTATGAAGCAAAGTGGGTGCTTAGGAACAGAGCAAAACTCAAAGGGCAGGATTGGGAGGATGTTGCAAAGTATGTGTCCTCAAGGGCAAACTCCACAAAATCACCNAAGACACAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCAGCAACTGCAGATGCATCATCCTCTTGGCCTTTGTATTCTCGACTTGATCTTCTTCTGCGTGGGACAGGACCAATTTCATCCACACTTCCACCACCACAAACACCAGCAACAGCAACAGTAGCAGTAGCAGCACCTTCTTCTCAATCACCACACCCCAGCAATAACCAGGCCTTGATGTTGTTAGAGCCACCATCACTTGCAGCGTCACAAGCTCCACATCAGCAATCTCCTACACCACCACCTGCTGCTGCTCCTACACCACCACCTGCTGCTGCTGCACAAAACTCACATGGATCCAATGGAGTTGATAGATTAGCCAAGTCATCTGACCATGTGTCTAACAAAAATCCATTGGACACGGATAGCAGTACACCTGCACTTTACAGTGAGAANGACAAGCTAAGATGCAACAAGAGGAAGATGAGAATTGAGAATAACAACAACAAGAGGAGAAAGAAAGAAGAGATGGGGATAGCAGAAAGCATAAGGTGGCTAGCAGAGGTGGTGGTGAGGTCAGAGCAAACAAGAATGGACACATTGAAAGAGATAGAGAGGATGAGANCTGAAGCTGAGGCAAAGCGAGGGGAAATGGATCTCAAGAGAACTGAAATCATTGCCAATACACAACTTGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCATCATTGAGAATTGGAAGAAGTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	502728	505349	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000839.1	PF13837.1	Myb_DNA-bind_4	67	153	2.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.302
SRR1783600	control	37.390
SRR1783602	moderate drought stress	31.382
SRR1811619	moderate drought stress	31.234

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.687
DRR006520	Root Summer glycyrrhizin high producing strain	48.743
DRR006521	Root Winter glycyrrhizin high producing strain	5.464
DRR006522	Root Winter glycyrrhizin high producing strain	5.184
DRR006523	Root Summer glycyrrhizin low producing strain	37.646
DRR006524	Root Summer glycyrrhizin low producing strain	38.790
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.914
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	30.510
SRR2868004	Drought Stress(Tissue:root)	35.148
SRR2967015	Control (Tissue:root)	20.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.492
SRR9715740	Leave	6.876
SRR9715741	Leave	5.249
SRR9715739	Root	1.118
SRR9715742	Root	10.865
SRR9715743	Root	10.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.403
SRR8749028	MeJA induced 9h	0.344
SRR8749029	MeJA induced 9h	0.174
SRR8749030	Uninduced	0.599
SRR8749031	Uninduced	0.264
SRR8749032	Uninduced	0.255

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	32.907
SRR8400027	Control-Root	31.914