Gene detail information of Glyur000015s00000860.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54460.10SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
NRKHN21309.10F-box protein [Glycine soja]
COGYP_007323167.14.00E-15SNF2-related protein [Fibrella aestuarina BUZ 2]
Swissprottr|Q9M1I1|FB304_ARATH0F-box protein At3g54460
trEMBLtr|I1LLD5|I1LLD5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G21600.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00015589345596959-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000860.1PF00646.28F-box2372740.00014
Glyur000015s00000860.1PF00176.18SNF2_N2839332.40E-80
Glyur000015s00000860.1PF07496.10zf-CW5385813.30E-15
Glyur000015s00000860.1PF00271.26Helicase_C116812431.10E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.100
SRR1783600control5.039
SRR1783602moderate drought stress5.341
SRR1811619moderate drought stress5.333

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.812
DRR006520Root Summer glycyrrhizin high producing strain5.718
DRR006521Root Winter glycyrrhizin high producing strain9.252
DRR006522Root Winter glycyrrhizin high producing strain9.092
DRR006523Root Summer glycyrrhizin low producing strain7.269
DRR006524Root Summer glycyrrhizin low producing strain7.193
DRR006525Leaf Summer glycyrrhizin high producing strain5.661
DRR006526Leaf Summer glycyrrhizin high producing strain5.587

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.475
SRR2868004Drought Stress(Tissue:root)12.253
SRR2967015Control (Tissue:root)11.499

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.823
SRR9715740Leave7.856
SRR9715741Leave8.833
SRR9715739Root1.553
SRR9715742Root6.010
SRR9715743Root5.683

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.739
SRR8749028MeJA induced 9h49.019
SRR8749029MeJA induced 9h26.769
SRR8749030Uninduced14.147
SRR8749031Uninduced31.890
SRR8749032Uninduced24.136

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.230
SRR8400027Control-Root12.074

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved