Gene detail information of Glyur000015s00000871.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54470.10uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
NRXP_004514472.10PREDICTED: uridine 5'-monophosphate synthase-like [Cicer arietinum]
COGYP_006426679.14.00E-123orotate phosphoribosyltransferase [Ornithobacterium rhinotracheale DSM 15997]
Swissprottr|Q42586|UMPS_ARATH0Orotidine 5'-phosphate decarboxylase
trEMBLtr|G7IYW1|G7IYW1_MEDTR0Uridine 5-monophosphate synthase-like protein {ECO:0000313|EMBL:AES68880.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00015624809628763+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13421UMPS EC:2.4.2.10 4.1.1.23 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

biological_process

GO:0006207  'de novo' pyrimidine nucleobase biosynthetic process

GO:0006221  pyrimidine nucleotide biosynthetic process

GO:0008152  metabolic process

GO:0009116  nucleoside metabolic process

GO:0044205  'de novo' UMP biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004588  orotate phosphoribosyltransferase activity

GO:0004590  orotidine-5'-phosphate decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000871.1PF00156.22Pribosyltran461504.40E-08
Glyur000015s00000871.1PF00215.19OMPdecase2464654.10E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.582
SRR1783600control34.620
SRR1783602moderate drought stress30.675
SRR1811619moderate drought stress30.628

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.636
DRR006520Root Summer glycyrrhizin high producing strain41.309
DRR006521Root Winter glycyrrhizin high producing strain14.483
DRR006522Root Winter glycyrrhizin high producing strain14.014
DRR006523Root Summer glycyrrhizin low producing strain37.369
DRR006524Root Summer glycyrrhizin low producing strain37.129
DRR006525Leaf Summer glycyrrhizin high producing strain14.454
DRR006526Leaf Summer glycyrrhizin high producing strain14.362

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.638
SRR2868004Drought Stress(Tissue:root)40.822
SRR2967015Control (Tissue:root)43.381

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.631
SRR9715740Leave12.850
SRR9715741Leave12.890
SRR9715739Root55.706
SRR9715742Root43.108
SRR9715743Root42.092

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.731
SRR8749028MeJA induced 9h20.473
SRR8749029MeJA induced 9h23.983
SRR8749030Uninduced12.455
SRR8749031Uninduced7.802
SRR8749032Uninduced10.402

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.114
SRR8400027Control-Root43.945

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved