Gene detail information of Glyur000015s00000872.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61790.11.00E-134Protein with RING/U-box and TRAF-like domains
NRXP_004517074.10PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cicer arietinum]
Swissprottr|Q8S3N1|SINA5_ARATH1.00E-170E3 ubiquitin-protein ligase SINAT5
trEMBLtr|V7BWM1|V7BWM1_PHAVU0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00015629233632802-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000872.1PF03145.11Sina982975.50E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.050
SRR1783600control20.189
SRR1783602moderate drought stress19.310
SRR1811619moderate drought stress19.076

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain42.766
DRR006520Root Summer glycyrrhizin high producing strain42.446
DRR006521Root Winter glycyrrhizin high producing strain25.588
DRR006522Root Winter glycyrrhizin high producing strain24.712
DRR006523Root Summer glycyrrhizin low producing strain59.505
DRR006524Root Summer glycyrrhizin low producing strain59.795
DRR006525Leaf Summer glycyrrhizin high producing strain16.658
DRR006526Leaf Summer glycyrrhizin high producing strain16.488

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.852
SRR2868004Drought Stress(Tissue:root)26.191
SRR2967015Control (Tissue:root)27.831

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.734
SRR9715740Leave28.631
SRR9715741Leave38.244
SRR9715739Root19.916
SRR9715742Root32.488
SRR9715743Root32.066

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.322
SRR8749028MeJA induced 9h49.570
SRR8749029MeJA induced 9h44.130
SRR8749030Uninduced95.044
SRR8749031Uninduced51.226
SRR8749032Uninduced50.758

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.970
SRR8400027Control-Root29.673

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved