Gene detail information of Glyur000016s00002997.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43420.1 | 2.00E-61 | RING/U-box superfamily protein |
| NR | KHN44971.1 | 0 | RING-H2 finger protein ATL16 [Glycine soja] |
| Swissprot | tr|Q9LSW9|ATL16_ARATH | 1.00E-77 | RING-H2 finger protein ATL16 |
| trEMBL | tr|I1LYJ1|I1LYJ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G18320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 27594 | 28649 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00002997.1 | PF13639.1 | zf-RING_2 | 131 | 173 | 1.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.289 |
| SRR1783600 | control | 0.313 |
| SRR1783602 | moderate drought stress | 0.602 |
| SRR1811619 | moderate drought stress | 0.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.925 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.039 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.568 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.176 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.979 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.956 |
| SRR2967015 | Control (Tissue:root) | 1.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.284 |
| SRR9715740 | Leave | 0.232 |
| SRR9715741 | Leave | 0.119 |
| SRR9715739 | Root | 0.047 |
| SRR9715742 | Root | 0.552 |
| SRR9715743 | Root | 0.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.019 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.817 |
| SRR8400027 | Control-Root | 0.989 |