Gene detail information of Glyur000016s00003009.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42430.1 | 1.00E-51 | lateral organ boundaries-domain 16 |
| NR | XP_003521280.1 | 9.48E-104 | PREDICTED: LOB domain-containing protein 16-like [Glycine max] |
| Swissprot | tr|Q9SLB7|LBD16_ARATH | 4.00E-80 | LOB domain-containing protein 16 |
| trEMBL | tr|I1JP22|I1JP22_SOYBN | 4.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G31830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 99057 | 100270 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003009.1 | PF03195.9 | DUF260 | 15 | 116 | 2.40E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.485 |
| SRR1783600 | control | 0.444 |
| SRR1783602 | moderate drought stress | 0.191 |
| SRR1811619 | moderate drought stress | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.835 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.165 |
| SRR2967015 | Control (Tissue:root) | 0.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 1.684 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.225 |
| SRR8749028 | MeJA induced 9h | 11.060 |
| SRR8749029 | MeJA induced 9h | 15.017 |
| SRR8749030 | Uninduced | 0.990 |
| SRR8749031 | Uninduced | 1.893 |
| SRR8749032 | Uninduced | 1.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.032 |
| SRR8400027 | Control-Root | 0.609 |