Gene detail information of Glyur000016s00003014.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43540.1 | 1.00E-10 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_007144929.1 | 5.06E-68 | hypothetical protein PHAVU_007G195500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SR34|TAC1_ARATH | 8.00E-14 | Transcriptional regulator TAC1 |
| trEMBL | tr|V7BIU7|V7BIU7_PHAVU | 2.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:ESW16923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 116079 | 116723 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.057 |
| SRR1783600 | control | 0.057 |
| SRR1783602 | moderate drought stress | 0.410 |
| SRR1811619 | moderate drought stress | 0.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.167 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.169 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.296 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.821 |
| SRR2967015 | Control (Tissue:root) | 12.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.040 |
| SRR8749028 | MeJA induced 9h | 0.285 |
| SRR8749029 | MeJA induced 9h | 0.043 |
| SRR8749030 | Uninduced | 0.338 |
| SRR8749031 | Uninduced | 0.185 |
| SRR8749032 | Uninduced | 0.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.452 |
| SRR8400027 | Control-Root | 1.074 |