Gene detail information of Glyur000016s00003045.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54650.1 | 1.00E-162 | RNI-like superfamily protein |
| NR | XP_004495144.1 | 0 | PREDICTED: F-box/LRR-repeat protein 17-like [Cicer arietinum] |
| Swissprot | tr|Q8W104|FBL17_ARATH | 0 | F-box/LRR-repeat protein 17 |
| trEMBL | tr|A0A072VKR1|A0A072VKR1_MEDTR | 0 | F-box/LRR protein, putative {ECO:0000313|EMBL:KEH42619.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 279356 | 283958 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.795 |
| SRR1783600 | control | 19.903 |
| SRR1783602 | moderate drought stress | 7.709 |
| SRR1811619 | moderate drought stress | 7.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.001 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.354 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.135 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.269 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.408 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.481 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.697 |
| SRR2967015 | Control (Tissue:root) | 16.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.559 |
| SRR9715740 | Leave | 0.318 |
| SRR9715741 | Leave | 1.174 |
| SRR9715739 | Root | 7.239 |
| SRR9715742 | Root | 4.355 |
| SRR9715743 | Root | 3.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 102.575 |
| SRR8749028 | MeJA induced 9h | 41.294 |
| SRR8749029 | MeJA induced 9h | 57.702 |
| SRR8749030 | Uninduced | 2.783 |
| SRR8749031 | Uninduced | 6.509 |
| SRR8749032 | Uninduced | 16.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.435 |
| SRR8400027 | Control-Root | 17.353 |