Gene detail information of Glyur000016s00003055.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02590.2 | 6.00E-83 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004495148.1 | 0 | PREDICTED: transcription factor UNE12-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|O22768|UNE12_ARATH | 3.00E-131 | Transcription factor UNE12 |
| trEMBL | tr|G7ICM9|G7ICM9_MEDTR | 0 | Basic helix loop helix protein BHLH4 {ECO:0000313|EMBL:AES60787.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 313926 | 322654 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
| EAR motif-containing Proteins | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00003055.1 | PF00010.21 | HLH | 135 | 179 | 4.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.594 |
| SRR1783600 | control | 56.957 |
| SRR1783602 | moderate drought stress | 87.680 |
| SRR1811619 | moderate drought stress | 87.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 63.821 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 63.365 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.817 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.743 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.099 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 67.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.891 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 58.197 |
| SRR2868004 | Drought Stress(Tissue:root) | 74.079 |
| SRR2967015 | Control (Tissue:root) | 80.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.108 |
| SRR9715740 | Leave | 26.751 |
| SRR9715741 | Leave | 29.638 |
| SRR9715739 | Root | 45.324 |
| SRR9715742 | Root | 53.622 |
| SRR9715743 | Root | 50.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.894 |
| SRR8749028 | MeJA induced 9h | 15.337 |
| SRR8749029 | MeJA induced 9h | 17.858 |
| SRR8749030 | Uninduced | 12.075 |
| SRR8749031 | Uninduced | 14.672 |
| SRR8749032 | Uninduced | 12.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 93.360 |
| SRR8400027 | Control-Root | 93.114 |