Gene detail

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Gene detail information of Glyur000016s00003072.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63410.1	8.00E-139	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	NP_001240248.1	0	uncharacterized protein LOC100783986 [Glycine max]
COG	YP_004596332.1	1.00E-43	type 11 methyltransferase [Halopiger xanaduensis SH-6]
Swissprot	tr\|P23525\|IN37_SPIOL	0	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|C6TGX5\|C6TGX5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G16210.2}

Sequence

Transcript Sequence

>Glyur000016s00003072.1
ATGGAAAATAAGAGGTTCAGGGTATGTGCGACACACAATCGAGCAGCCAATTTCCCTTTCACTTTCCACCTTCGCTTCAAGGCTGTGTGCTTCGTGTTTCTCTTTCGTCCCCTCTCTCTCACACCTACCCGATTGATTCAATTCAATTCAATGGCTTCACTAATGCTCAGTGTCAGTGGAACTGAAAAGCTGACACTTTTGAGTAGCAGATCCCCAAATGGAAATGGGTTAGGTTTCATGGGTTCTGATTTGCACGGGAAGAGCTTGAGCTTCCCAAAAACGGGTTTCCTTGCTGCCACCGCCACTACTAGGGTTCCCAATTTGAGGACCATTGTAGTACCCAAGTGTAGTGTCTCTGCTTCGAGGCCAAGCTCACAGCCTAGGTTCATACAGCACAAGAAAGAGGCATTTTGGTTCTACAGGTTCCTCTCAATTGTGTATGACCATGTCATAAACCCTGGCCATTGGACTGAGGACATGAGAGATGATGCTCTCGAACCGGCTGATCTTAATGATAGGAACATGATAGTGGTGGATGTTGGTGGTGGCACGGGTTTCACCACATTGGGTATTGTCAAGCATGTGGATGCAAAGAATGTTACCATTCTTGACCAGTCACCTCATCAGCTTGCTAAGGCCAAGCAAAAGGAACCGCTCAAAGATTGCAAAATTATCGAAGGGGATGCCGAAGATCTCCCCTTTCGAACTGATTATGCTGATAGATATGTATCNGCCGGAAGTATTGAATATTGGCCGGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAACTTGGGGGCAAAGCATGTCTAATTGGTCCCGTCTACCCAACATTTTGGTTGTCACGTTTCTTTGCAGATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATTGAGTGGTTTAAAAAGGCAGGGTTTAAGGATGTCCAACTGAAAAGGATTGGCCCAAAATGGTATCGTGGTGTTCGCCGTCATGGCTTGATTATGGGCTGTTCAGTGACTGGTGTTAAGCCTGCTTCTGGGGATTCTCCTTTGCAGCTTGGTCCAAAGGAAGAAGATGTTGAAAAGCCTGTAAAACCTTTTGTCTTTTTACTGCGCTTTGCTTTGGGTGCCCTGGCAGCTACATGGTTTGTATTGGTTCCTATTTACATGTGGCTCAAAAATCAAATTGTTCCCAAAGGTCAACCAATCTGAGAGATATTTGTAGTTAGTGAACCTTTTGATACTATCAGTGTCTTTTTTAAAGTTTGGTCAAATGTAAGATTATTATATAAGCAATTGAGAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	402399	405374	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12502	VTE3, APG1	EC:2.1.1.295	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003072.1	PF08241.7	Methyltransf_11	178	272	1.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.943
SRR1783600	control	45.181
SRR1783602	moderate drought stress	34.293
SRR1811619	moderate drought stress	34.171

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.759
DRR006520	Root Summer glycyrrhizin high producing strain	52.426
DRR006521	Root Winter glycyrrhizin high producing strain	21.514
DRR006522	Root Winter glycyrrhizin high producing strain	20.595
DRR006523	Root Summer glycyrrhizin low producing strain	47.482
DRR006524	Root Summer glycyrrhizin low producing strain	48.026
DRR006525	Leaf Summer glycyrrhizin high producing strain	161.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	160.922

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	60.800
SRR2868004	Drought Stress(Tissue:root)	51.188
SRR2967015	Control (Tissue:root)	42.406

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	209.032
SRR9715740	Leave	227.709
SRR9715741	Leave	178.595
SRR9715739	Root	62.939
SRR9715742	Root	50.756
SRR9715743	Root	50.685

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.280
SRR8749028	MeJA induced 9h	20.748
SRR8749029	MeJA induced 9h	24.285
SRR8749030	Uninduced	11.315
SRR8749031	Uninduced	4.802
SRR8749032	Uninduced	9.032

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	83.038
SRR8400027	Control-Root	84.989