Gene detail information of Glyur000016s00003072.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G63410.18.00E-139S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NRNP_001240248.10uncharacterized protein LOC100783986 [Glycine max]
COGYP_004596332.11.00E-43type 11 methyltransferase [Halopiger xanaduensis SH-6]
Swissprottr|P23525|IN37_SPIOL02-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic (Precursor)
trEMBLtr|C6TGX5|C6TGX5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G16210.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00016402399405374+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12502VTE3, APG1 EC:2.1.1.295 Ubiquinone and other terpenoid-quinone biosynthesis map00130


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000016s00003072.2PF08241.7Methyltransf_111282221.20E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.943
SRR1783600control45.181
SRR1783602moderate drought stress34.293
SRR1811619moderate drought stress34.171

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.759
DRR006520Root Summer glycyrrhizin high producing strain52.426
DRR006521Root Winter glycyrrhizin high producing strain21.514
DRR006522Root Winter glycyrrhizin high producing strain20.595
DRR006523Root Summer glycyrrhizin low producing strain47.482
DRR006524Root Summer glycyrrhizin low producing strain48.026
DRR006525Leaf Summer glycyrrhizin high producing strain161.623
DRR006526Leaf Summer glycyrrhizin high producing strain160.922

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.800
SRR2868004Drought Stress(Tissue:root)51.188
SRR2967015Control (Tissue:root)42.406

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave209.032
SRR9715740Leave227.709
SRR9715741Leave178.595
SRR9715739Root62.939
SRR9715742Root50.756
SRR9715743Root50.685

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.280
SRR8749028MeJA induced 9h20.748
SRR8749029MeJA induced 9h24.285
SRR8749030Uninduced11.315
SRR8749031Uninduced4.802
SRR8749032Uninduced9.032

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root83.038
SRR8400027Control-Root84.989

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved