Gene detail information of Glyur000016s00003080.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50700.1 | 1.00E-64 | indeterminate(ID)-domain 2 |
| NR | XP_003590574.1 | 0 | Zinc finger protein-like protein [Medicago truncatula] |
| Swissprot | tr|O22759|IDD12_ARATH | 3.00E-95 | Protein indeterminate-domain 12 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|V7BGM2|V7BGM2_PHAVU | 9.00E-178 | Uncharacterized protein {ECO:0000313|EMBL:ESW16660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 481585 | 485720 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.527 |
| SRR1783600 | control | 40.177 |
| SRR1783602 | moderate drought stress | 52.115 |
| SRR1811619 | moderate drought stress | 51.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.584 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.745 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.604 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.592 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.155 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.542 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.941 |
| SRR2967015 | Control (Tissue:root) | 1.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.877 |
| SRR9715740 | Leave | 1.692 |
| SRR9715741 | Leave | 3.357 |
| SRR9715739 | Root | 13.013 |
| SRR9715742 | Root | 11.600 |
| SRR9715743 | Root | 11.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.303 |
| SRR8749028 | MeJA induced 9h | 0.389 |
| SRR8749029 | MeJA induced 9h | 0.077 |
| SRR8749030 | Uninduced | 2.120 |
| SRR8749031 | Uninduced | 1.190 |
| SRR8749032 | Uninduced | 0.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.392 |
| SRR8400027 | Control-Root | 27.049 |