Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000016s00003085.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02680.1	0	ETO1-like 1
NR	XP_003590582.1	0	Ethylene overproducer-like protein [Medicago truncatula]
COG	YP_002290673.1	2.00E-06	hypothetical protein OCAR_7710 [Oligotropha carboxidovorans OM5]
Swissprot	tr\|Q9ZQX6\|ETOL1_ARATH	0	ETO1-like protein 1
trEMBL	tr\|G7IDJ7\|G7IDJ7_MEDTR	0	Ethylene overproducer-like protein {ECO:0000313\|EMBL:AES60833.1}

Sequence

Transcript Sequence

>Glyur000016s00003085.1
CTGTTATTTTCCTTTTCATATTTCAATTGTTTCAGTCATCACTTCTTCTTTTGTTTGAAGTTAAGTGTTTTTCACTTTCAATCAACCAAGTTCAATTCCATTCTTTTTTATTTTGGCAAGTTCAGCTTCCAACAACCAATAGTGGCCGCAACTTTCCATGGTGTCCAACTCCAACGGAAGGAAAGCGAGAAAGAAAGGAAAAGTTATTGACTTTCCCTTTCACCAAACAGGGCAAAAAGTAAAAGCTAGTTAAAGTCGAAATTCTTCAGTTTAGGTTCTGTTCCCCTTTGATCTACATACGGCCCTTCATCCCCTGCTCTCCAAATCCTTCATTTGGTTCTGCAGATTGAAGCCACAAATTTTGAAGAGGAAACACATAGTGCAGTAGTGGAGATCTGGGACTTGTTTCGTCTCTTATGCCCCATGAGGACTTTCTTCANTGCAGAATCATGTAAAGAAGTGCACCCGAATGCTCTTAATCCGCAGTCCTGGCTCCAAGTTGAAAGAGGGAAGCTTCCCAAATTGTCATCACAGTCCTCCTCTCCATCAATAGAATCTCTAATCAAGGTCCCACAGCCACCTGTACTCCCGTTCTTTAAACCTGCTNATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAACTGGAGTCGTGTNCTCCACAGGAGCAGTCGAATCTGTTTCTGTTGCAATATCAGGTCTTTAGAGGCCTTGGGGATGTTAAACTGATGCGGAGAAGCCTCCGCGAAGCTTGGCGGAGGGCTAGCACTGTTCATGAGAAGATTGTATTTGGGGCATGGTTGAAGTATGAGAAGCGAGGGGAAGAGCTAGTCGCCGGCTTGCTGACGGGTAAACGTGAAAAGGAATATGGGCCCATAGATGTAGAATCTCATATTCCTTCTGATATAAATGTGAGTTCCCAGGAGAGAGTTTTGATGAATGGGAACCACACTTCACAATCTGTNATTTTTACAATTGGAAATGAGAAGATAATTTGTGATAGACAAAAGATTTCTGAGCTCTCAGCGCCATTTCGTGCAATGCTAAATGGGTATTTCAGGGAATCAGTTTCTGAGACTATAGATTTGTCTGAAAACAATCTCTCTCCTTTAGGCATGAGGGCAATAAGTTATTTCAGTTTGACAGGCAGTTTACTTGAGGTCCCTCCAAATCTTTTGTTGGAGATGTTAGTTTTTGCCAACAAGTATTGTTGCGATAGACTAAAAAAGGCTTGTGATAGAAGACTTGCATCCTTAGTTTCCTCCAAGGAAGATGCTGTGGAACTCATGCAATATGCTCTTGATGAGAATTCAGCTGTCCTTGCAGCTTCTTGTTTACAAGTCCTTTTACGTGATCTTCCCCATTGCTTGAGTGACAATCAGGTGGTGGAGTTATTCCTTCACGCTAATAAGCAGCGGTTGGTAGTTATGATTGGACCAGGTTTATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACGGTTCNTTTTCTGGAAAGGTTAGTTGATTTTGCTGAAAATGACAAGCAGAGAATGCTGGCATTTCATCAATTGGGATTTGTGAGACTCTTGCAGAAAGAATATGATGAAGCTAAGTGCCTTTTTGAGGGGGCTGTAAATGCNGGTCATATTTATTCTGTTGTGGGTTTAGCTAGACTTAACTATATAAAGGGTGAGAACCAATTATCCTATGAGAGGATCAGCTCAGTTATTTCCTCTGTTACCCCACTTGGATGGATGTACNAGGAAAGATCACTATACTGTGATGGTGATTTGAGGTGGAAAGACCTTGAGAAAGCAACTGAACTAGACCCTACTCTTGTATATCCCTATATGTATAGGGCTGCCTCTTTAATGAGGACAGAGAATGCTCAAGGTGCACTGGCTGAAATCAATCGGATTCTTGGCTTCAAACTTTCATTAGAATGCTTGGAACTACGGTTTTTCATCTATCTGGCTCTTGAGGACTACAAAGCAGCCCTTCGTGATGTTCAAGCAATTCTTACTCTATGTCCACATTATAGAATGTTTGAGGGGCGCGTAGCCGCATCTCAACTCCGTACTCTTGTGCGTGAGCATGTCGAACATTTGACAACAGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTGCTGTTGATGATATCGAGTCTTTATCTGTTATTTACCAGATGCTTGAATCTGATGCTGCAAAAGGTGTTCTATACTTCAGACAGTCATTGCTTCTCCTCAGGCTAAACTGTCCTGAGGCAGCCATGCGAAGTTTACAGTTAGCTTGGCAGCATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTGTATGATACTGGTCATTATGANGAAGGGCTCCAAAAAGCCGAAGAGTCTATTAGTATTAAAAGGTCTTTTGAGGCCTACTTCCTGAAGGCCTATGCATTGGCCGACTCTGGTCTAGATTCANCGTGTTCTTCAATTGTTATTTCACTTNTGGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGTCAGGCCCTGAACAACCTTGGGAGTGTTTTTGTTGATTGCGGAAAATTGGACCAAGCAGCTGATTGCTATATCAAAGCCCTTAAAATCCGGCACACCCGAGCCCACCAGGGTCTCGCGCGTGTTCATTTCCTAAAAAATGATAAGGCTGCTGCTTATAAGGAAACGACCAAGCTCATTGAGAAGGCNAGAAACAACGCATCAGCGTATGAGAAGAGGTCTGAGTACGGTGATCGTGAACAAACGAAGGCAGATCTGGAGATGGTGACTAGATTAGATCCACTTCGTGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAAGAGGAAGCTATTGCTGAACTCTCAAGAGCAATTGCATTTAAAGCTGATTTACACCTCTTACATCTACGTGCAGCATTCCATGAACACAAGGGGGATGTCCTGGGTGCGCTAAGAGACTGTCGCGCCGCGCTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCACACTCGTGTCAATAGCCACGAGCCATGAGTCAAGACCAGTGGTATAACCTTGGCTGGCATTGAAAAGCAAAAAACTCAGCCACTGCCACACTATGAAGGATGAAGAGGGATAGCATTTATGCACCCATCAGTAGTCATGGAAATTAAATTTGTAAATGAAACGTATAGTTAAATTGAGTGATTAGAACCGTTTGTATACCCTGTAGTCATGAACATGTGATGATGATAGTATCATTTTCCCTCCTACGCGCGGGGGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00016	516768	521686	-

Gene family

Gene family	subfamily
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000016s00003085.1	PF13371.1	TPR_9	485	554	0.16
Glyur000016s00003085.1	PF13414.1	TPR_11	709	768	2.10E-06
Glyur000016s00003085.1	PF13371.1	TPR_9	785	832	0.33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.891
SRR1783600	control	13.911
SRR1783602	moderate drought stress	13.141
SRR1811619	moderate drought stress	13.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.197
DRR006520	Root Summer glycyrrhizin high producing strain	20.589
DRR006521	Root Winter glycyrrhizin high producing strain	8.537
DRR006522	Root Winter glycyrrhizin high producing strain	8.110
DRR006523	Root Summer glycyrrhizin low producing strain	16.378
DRR006524	Root Summer glycyrrhizin low producing strain	16.840
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.614
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.140

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	38.153
SRR2868004	Drought Stress(Tissue:root)	43.383
SRR2967015	Control (Tissue:root)	39.927

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.417
SRR9715740	Leave	10.676
SRR9715741	Leave	14.468
SRR9715739	Root	7.438
SRR9715742	Root	19.388
SRR9715743	Root	18.154

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.600
SRR8749028	MeJA induced 9h	7.702
SRR8749029	MeJA induced 9h	4.028
SRR8749030	Uninduced	5.324
SRR8749031	Uninduced	2.098
SRR8749032	Uninduced	1.566

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	27.669
SRR8400027	Control-Root	29.222