Gene detail information of Glyur000016s00003097.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G03090.20methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)
NRXP_004495179.10PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X2 [Cicer arietinum]
COGYP_003146243.10carbamoyl-phosphate synthase L chain ATP-binding [Kangiella koreensis DSM 16069]
Swissprottr|Q42777|MCCA_SOYBN0Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial (Precursor)
trEMBLtr|G7IDL5|G7IDL5_MEDTR0Acetyl-CoA carboxylase, putative {ECO:0000313|EMBL:AES60851.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00016603998611754+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01968E6.4.1.4A EC:6.4.1.4 Valine, leucine and isoleucine degradation map00280


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004075  biotin carboxylase activity

GO:0005524  ATP binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000016s00003097.1PF00289.17CPSase_L_chain37765.60E-13
Glyur000016s00003097.1PF00289.17CPSase_L_chain761108.70E-10
Glyur000016s00003097.1PF02786.12CPSase_L_D21153234.20E-76
Glyur000016s00003097.1PF02785.14Biotin_carb_C3374438.50E-36
Glyur000016s00003097.1PF00364.17Biotin_lipoyl6316955.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.422
SRR1783600control5.546
SRR1783602moderate drought stress8.558
SRR1811619moderate drought stress8.838

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.299
DRR006520Root Summer glycyrrhizin high producing strain5.281
DRR006521Root Winter glycyrrhizin high producing strain13.460
DRR006522Root Winter glycyrrhizin high producing strain13.079
DRR006523Root Summer glycyrrhizin low producing strain3.534
DRR006524Root Summer glycyrrhizin low producing strain3.641
DRR006525Leaf Summer glycyrrhizin high producing strain6.830
DRR006526Leaf Summer glycyrrhizin high producing strain6.770

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.259
SRR2868004Drought Stress(Tissue:root)13.376
SRR2967015Control (Tissue:root)16.286

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.743
SRR9715740Leave13.982
SRR9715741Leave14.768
SRR9715739Root3.423
SRR9715742Root6.947
SRR9715743Root6.432

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.101
SRR8749028MeJA induced 9h13.126
SRR8749029MeJA induced 9h8.243
SRR8749030Uninduced14.814
SRR8749031Uninduced43.954
SRR8749032Uninduced26.216

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.881
SRR8400027Control-Root8.525

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved