Gene detail information of Glyur000017s00002371.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34570.10thymidylate synthase 2
NRXP_004507474.10PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X3 [Cicer arietinum]
COGYP_005320426.18.00E-86thymidylate synthase [Saprospira grandis str. Lewin]
Swissprottr|P51820|DRTS_SOYBN0Thymidylate synthase
trEMBLtr|K7LP84|K7LP84_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G12280.2} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000172061523738-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13998DHFR-TS EC:1.5.1.3 2.1.1.45 Pyrimidine metabolism map00240
Folate biosynthesismap00790
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0006231  dTMP biosynthetic process

GO:0006545  glycine biosynthetic process

GO:0006730  one-carbon metabolic process

GO:0009165  nucleotide biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004146  dihydrofolate reductase activity

GO:0004799  thymidylate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000017s00002371.1PF00186.14DHFR_1261971.20E-25
Glyur000017s00002371.1PF00303.14Thymidylat_synt2415391.60E-108


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.150
SRR1783600control16.399
SRR1783602moderate drought stress10.909
SRR1811619moderate drought stress11.111

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.328
DRR006520Root Summer glycyrrhizin high producing strain13.547
DRR006521Root Winter glycyrrhizin high producing strain13.046
DRR006522Root Winter glycyrrhizin high producing strain12.618
DRR006523Root Summer glycyrrhizin low producing strain12.001
DRR006524Root Summer glycyrrhizin low producing strain11.668
DRR006525Leaf Summer glycyrrhizin high producing strain5.211
DRR006526Leaf Summer glycyrrhizin high producing strain5.167

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.904
SRR2868004Drought Stress(Tissue:root)18.953
SRR2967015Control (Tissue:root)19.573

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.424
SRR9715740Leave5.238
SRR9715741Leave5.231
SRR9715739Root11.548
SRR9715742Root14.928
SRR9715743Root14.413

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.788
SRR8749028MeJA induced 9h12.096
SRR8749029MeJA induced 9h13.754
SRR8749030Uninduced5.148
SRR8749031Uninduced7.598
SRR8749032Uninduced4.187

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.747
SRR8400027Control-Root26.667

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved